Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,575,130 – 7,575,275 |
Length | 145 |
Max. P | 0.998969 |
Location | 7,575,130 – 7,575,237 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 90.27 |
Mean single sequence MFE | -25.60 |
Consensus MFE | -21.00 |
Energy contribution | -21.56 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.16 |
Mean z-score | -2.28 |
Structure conservation index | 0.82 |
SVM decision value | 2.05 |
SVM RNA-class probability | 0.986527 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7575130 107 + 27905053 CAACUUAUUACUAAUUAAGUUCAGCAGUUCUUUAUUUUAGCCAACGCAAUAGGGAUGAGCGUUGUAUCGAUAUGUCAGCAUAUCGAUAUGUCUAAGCUGAUAUUAAG ..(((((........)))))(((((................((((((...........))))))((((((((((....)))))))))).......)))))....... ( -28.40) >DroSec_CAF1 7148 107 + 1 CAACUUAUUAUUAAUUAAGUUCAGCAGUUUUUUUUUUUAGCCAACGCAAUAGGGAUGAACGUUGUAUCGAUAUGUCAGCAUAUCGAUAUGUCUAAGCUGAUAUUAAG ..(((((........)))))(((((.((((.(((((...((....))...))))).))))...(((((((((((....)))))))))))......)))))....... ( -27.30) >DroSim_CAF1 7584 107 + 1 CAACUUAUUAUUAAUUAAGUUCAGCAGUUCUUUUUUUUAGCCAACGCAAUAGGGAUGAACGUUGUAUCGAUAUGUCAGCAUAUCGAUAUGUCUAGGCUGAUAUUAAG ..(((((........)))))(((((.((((.(((((...((....))...))))).))))...(((((((((((....)))))))))))......)))))....... ( -28.80) >DroEre_CAF1 7570 104 + 1 CAACUUAUUAUUAAUUAAGUUCAUCAGUUUU---UUUCAGUCAACGUAAUAGGGAUGAGCGCAAUAUCGAUAUGCCAGCAUAUCGAUAUGUCUAGGCUGAUAUUAAA .((((((........))))))..........---..((((((..(((.......)))((.(((.((((((((((....))))))))))))))).))))))....... ( -24.40) >DroYak_CAF1 7238 106 + 1 CAACUUAUUAUUAAUUAAGUUCAUCAGUUUUU-UUUUUAGUUAACGCAAUAGGGAUGAGCGCAGUAUCGAUAUUACAGCAUAUCGAUAUGUCUAAGCUGUUAUUUAA ((.((((...........(((((((.(((..(-(....))..)))........)))))))...((((((((((......))))))))))...)))).))........ ( -19.10) >consensus CAACUUAUUAUUAAUUAAGUUCAGCAGUUUUUUUUUUUAGCCAACGCAAUAGGGAUGAGCGUUGUAUCGAUAUGUCAGCAUAUCGAUAUGUCUAAGCUGAUAUUAAG .((((((........))))))((((.((((.(((((...((....))...))))).))))...(((((((((((....)))))))))))......))))........ (-21.00 = -21.56 + 0.56)
Location | 7,575,130 – 7,575,237 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 90.27 |
Mean single sequence MFE | -23.62 |
Consensus MFE | -20.08 |
Energy contribution | -20.96 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.12 |
Mean z-score | -2.76 |
Structure conservation index | 0.85 |
SVM decision value | 3.31 |
SVM RNA-class probability | 0.998969 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7575130 107 - 27905053 CUUAAUAUCAGCUUAGACAUAUCGAUAUGCUGACAUAUCGAUACAACGCUCAUCCCUAUUGCGUUGGCUAAAAUAAAGAACUGCUGAACUUAAUUAGUAAUAAGUUG ........(((((((....((((((((((....))))))))))((((((...........))))))...............((((((......)))))).))))))) ( -27.60) >DroSec_CAF1 7148 107 - 1 CUUAAUAUCAGCUUAGACAUAUCGAUAUGCUGACAUAUCGAUACAACGUUCAUCCCUAUUGCGUUGGCUAAAAAAAAAAACUGCUGAACUUAAUUAAUAAUAAGUUG .......(((((.......((((((((((....))))))))))((((((...........))))))................)))))(((((........))))).. ( -25.40) >DroSim_CAF1 7584 107 - 1 CUUAAUAUCAGCCUAGACAUAUCGAUAUGCUGACAUAUCGAUACAACGUUCAUCCCUAUUGCGUUGGCUAAAAAAAAGAACUGCUGAACUUAAUUAAUAAUAAGUUG .......(((((.......((((((((((....))))))))))((((((...........))))))................)))))(((((........))))).. ( -25.00) >DroEre_CAF1 7570 104 - 1 UUUAAUAUCAGCCUAGACAUAUCGAUAUGCUGGCAUAUCGAUAUUGCGCUCAUCCCUAUUACGUUGACUGAAA---AAAACUGAUGAACUUAAUUAAUAAUAAGUUG .....((((((.......(((((((((((....)))))))))))..((.(((............))).))...---....))))))((((((........)))))). ( -21.20) >DroYak_CAF1 7238 106 - 1 UUAAAUAACAGCUUAGACAUAUCGAUAUGCUGUAAUAUCGAUACUGCGCUCAUCCCUAUUGCGUUAACUAAAAA-AAAAACUGAUGAACUUAAUUAAUAAUAAGUUG ........(((((((....(((((((((......)))))))))..((((...........))))..........-.........................))))))) ( -18.90) >consensus CUUAAUAUCAGCUUAGACAUAUCGAUAUGCUGACAUAUCGAUACAACGCUCAUCCCUAUUGCGUUGGCUAAAAAAAAAAACUGCUGAACUUAAUUAAUAAUAAGUUG ........((((.......((((((((((....))))))))))((((((...........))))))................))))((((((........)))))). (-20.08 = -20.96 + 0.88)
Location | 7,575,162 – 7,575,275 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 84.77 |
Mean single sequence MFE | -28.66 |
Consensus MFE | -22.78 |
Energy contribution | -22.58 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.19 |
Mean z-score | -2.92 |
Structure conservation index | 0.79 |
SVM decision value | 2.53 |
SVM RNA-class probability | 0.995024 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7575162 113 + 27905053 UAUUUUAGCCAACGCAAUAGGGAUGAGCGUUGUAUCGAUAUGUCAGCAUAUCGAUAUGUCUAAGCUGAUAUUAAGCUGAUGCGUUUAUUUUGUAUUAACUUAAAUUAAAAUUU ....(((((((((((...........))))))((((((((((....)))))))))).......)))))..(((((.(((((((.......))))))).))))).......... ( -31.60) >DroSec_CAF1 7180 113 + 1 UUUUUUAGCCAACGCAAUAGGGAUGAACGUUGUAUCGAUAUGUCAGCAUAUCGAUAUGUCUAAGCUGAUAUUAAGCUGAUGCGUUUAUUUUGUAUUAACUUAAAUUAAAAUUU ..(((((((....))(((((((((((((((.(((((((((((....)))))))))))(((..((((.......)))))))))))))))))).)))).........)))))... ( -27.90) >DroSim_CAF1 7616 113 + 1 UUUUUUAGCCAACGCAAUAGGGAUGAACGUUGUAUCGAUAUGUCAGCAUAUCGAUAUGUCUAGGCUGAUAUUAAGCUGAUGCGUUUAUUUUGUAUUAACUUAAAUUAAAAUUU ....((((((((((.............))))(((((((((((....))))))))))).....))))))..(((((.(((((((.......))))))).))))).......... ( -30.82) >DroEre_CAF1 7601 111 + 1 --UUUCAGUCAACGUAAUAGGGAUGAGCGCAAUAUCGAUAUGCCAGCAUAUCGAUAUGUCUAGGCUGAUAUUAAAUUGAUGCGUUUAUUUUGUAUUAAGCUGAAUUAUUAUUU --.((((((.....((((((((((((((((((((((((((((....)))))))))))(((......)))..........)))))))))))).))))).))))))......... ( -34.50) >DroYak_CAF1 7270 101 + 1 -UUUUUAGUUAACGCAAUAGGGAUGAGCGCAGUAUCGAUAUUACAGCAUAUCGAUAUGUCUAAGCUGUUAUUUAAUUGUGCCGUUUAUUUUUUAAUAAG-----------UUU -...........((((((..((((((((...((((((((((......))))))))))......)))..))))).))))))...((((((....))))))-----------... ( -18.50) >consensus UUUUUUAGCCAACGCAAUAGGGAUGAGCGUUGUAUCGAUAUGUCAGCAUAUCGAUAUGUCUAAGCUGAUAUUAAGCUGAUGCGUUUAUUUUGUAUUAACUUAAAUUAAAAUUU ...................(((((((((((.(((((((((((....))))))))))).....((((.......))))...)))))))))))...................... (-22.78 = -22.58 + -0.20)
Location | 7,575,162 – 7,575,275 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 84.77 |
Mean single sequence MFE | -21.30 |
Consensus MFE | -15.44 |
Energy contribution | -15.76 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.21 |
Mean z-score | -2.83 |
Structure conservation index | 0.72 |
SVM decision value | 1.86 |
SVM RNA-class probability | 0.980448 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7575162 113 - 27905053 AAAUUUUAAUUUAAGUUAAUACAAAAUAAACGCAUCAGCUUAAUAUCAGCUUAGACAUAUCGAUAUGCUGACAUAUCGAUACAACGCUCAUCCCUAUUGCGUUGGCUAAAAUA ..((((((..(((((((.((.(.........).)).))))))).....((.......((((((((((....))))))))))((((((...........)))))))))))))). ( -24.00) >DroSec_CAF1 7180 113 - 1 AAAUUUUAAUUUAAGUUAAUACAAAAUAAACGCAUCAGCUUAAUAUCAGCUUAGACAUAUCGAUAUGCUGACAUAUCGAUACAACGUUCAUCCCUAUUGCGUUGGCUAAAAAA ..........(((((((.((.(.........).)).)))))))....(((.......((((((((((....))))))))))((((((...........)))))))))...... ( -21.70) >DroSim_CAF1 7616 113 - 1 AAAUUUUAAUUUAAGUUAAUACAAAAUAAACGCAUCAGCUUAAUAUCAGCCUAGACAUAUCGAUAUGCUGACAUAUCGAUACAACGUUCAUCCCUAUUGCGUUGGCUAAAAAA ..........(((((((.((.(.........).)).)))))))....((((......((((((((((....)))))))))).(((((...........)))))))))...... ( -21.60) >DroEre_CAF1 7601 111 - 1 AAAUAAUAAUUCAGCUUAAUACAAAAUAAACGCAUCAAUUUAAUAUCAGCCUAGACAUAUCGAUAUGCUGGCAUAUCGAUAUUGCGCUCAUCCCUAUUACGUUGACUGAAA-- ..........(((((.(((((.........((((...........((......)).(((((((((((....)))))))))))))))........))))).)))))......-- ( -22.43) >DroYak_CAF1 7270 101 - 1 AAA-----------CUUAUUAAAAAAUAAACGGCACAAUUAAAUAACAGCUUAGACAUAUCGAUAUGCUGUAAUAUCGAUACUGCGCUCAUCCCUAUUGCGUUAACUAAAAA- ...-----------.................(((.((((........(((.(((...(((((((((......)))))))))))).))).......)))).))).........- ( -16.76) >consensus AAAUUUUAAUUUAAGUUAAUACAAAAUAAACGCAUCAGCUUAAUAUCAGCUUAGACAUAUCGAUAUGCUGACAUAUCGAUACAACGCUCAUCCCUAUUGCGUUGGCUAAAAAA ...................................................(((...((((((((((....))))))))))((((((...........)))))).)))..... (-15.44 = -15.76 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:35 2006