Locus 2825

Sequence ID 3R_DroMel_CAF1
Location 7,571,975 – 7,572,078
Length 103
Max. P 0.559443
window4563

overview

Window 3

Location 7,571,975 – 7,572,078
Length 103
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 74.32
Mean single sequence MFE -42.17
Consensus MFE -23.32
Energy contribution -22.63
Covariance contribution -0.69
Combinations/Pair 1.53
Mean z-score -1.49
Structure conservation index 0.55
SVM decision value 0.05
SVM RNA-class probability 0.559443
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7571975 103 - 27905053
CAAGG----CGGAAGCAGUCGCAGUUCUUUGAGUGGAGCUUUGAAUGCGGCUGCAGUGGCAGCCACAGCGGCGGCGGUACAGGCACAAACUUUUAGUGAUUUGCUAU
...((----((((.((.(((((((((((......)))))).....((.((((((....)))))).))))))).))........(((.........))).)))))).. ( -36.10)
>DroVir_CAF1 5048 107 - 1
CAAUGCCACGGGCAGCAGUCGCAGCUCACUGAGUGGUGCUAUGAGCGCUGCAGCUGUGGCCGCCACGGUGGCUGCCGCUCAGGCGCAAUCAUUUCACGAUCUGCUCU
...((((...))))((((((...((((...)))).(((..(((((((((..(((.(..(((((....)))))..).)))..)))))..))))..))))).))))... ( -45.90)
>DroPse_CAF1 3861 103 - 1
CAAGG----CGGUAGCAGCCGCAGUUCGUUAAGUGGCGCUAUGAGUGCUGCCGCUGUAGCGGCAACAGCGGCUGCGGCCCAAGCUCAAUCCUUCAGCGAGCUCCUGU
..(((----.(((.((((((((.(((........(((((.....)))))(((((....)))))))).)))))))).)))..(((((...........)))))))).. ( -46.00)
>DroGri_CAF1 4972 107 - 1
CAAUGCAACCGGCAGCAGUCGCAGCUCUCUCAGCGGUGCCAUGAGCGCAGCCGCUGUGGCUGCCACUGUGGCAGCGGCACAGGCGCAAUCCUUUCACGAUCUUAUUU
.........((((.(((((.((((((....((((((((((....).))).)))))).)))))).))))).)).(((.(...).)))..........))......... ( -39.30)
>DroAna_CAF1 4508 103 - 1
CAAGG----CGGUAGCAGUCGGAGCUCAUUGAGCGGAGCUCUCAAUGCGGCAGCUGUUGCAGGCGCAGCUGCAGCAGCACAGGCGCAAUCCUUUAACGUUCUCUUGU
....(----((((.(((...(((((((........)))))))...))).)).((((((((((......)))))))))).....)))..................... ( -39.30)
>DroPer_CAF1 3865 103 - 1
CAAGG----CGGUAGCAGCCGGAGUUCGUUAAGUGGCGCUAUGAGUGCUGCCGCUGUGGCGGCAACAGCGGCUGCGGCCCAAGCUCAAUCCUUCAGCGAGCUCCUGU
...((----(.......)))((((((((((..(..((((.....))))..).((((..((.((....)).))..))))................))))))))))... ( -46.40)
>consensus
CAAGG____CGGUAGCAGUCGCAGCUCAUUGAGUGGAGCUAUGAGUGCUGCCGCUGUGGCAGCCACAGCGGCUGCGGCACAGGCGCAAUCCUUUAACGAUCUCCUGU
..........(((....)))((((.((...(((..(.(((.((.((((.((((((((.......)))))))).)).)).))))).)....)))....)).))))... (-23.32 = -22.63 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:31 2006