Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,568,211 – 7,568,309 |
Length | 98 |
Max. P | 0.554273 |
Location | 7,568,211 – 7,568,309 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 80.78 |
Mean single sequence MFE | -33.03 |
Consensus MFE | -23.16 |
Energy contribution | -24.33 |
Covariance contribution | 1.17 |
Combinations/Pair | 1.16 |
Mean z-score | -1.25 |
Structure conservation index | 0.70 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.554273 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7568211 98 + 27905053 UCAAUGCUCGACGA------GGCGGGUGG---UGUCACCGCCGGAGGAGCAACGAGUGCAAAGAAACGCAAGGAUGA---CGAUAAUCCAUCGGGCAGCAACAAGCAACC ....(((((((...------.((((((((---.....)))))......(((.....))).......)))..((((..---.....)))).)))))))((.....)).... ( -30.90) >DroPse_CAF1 267 106 + 1 UCCAUGCUAGAGGAGGACGAGGCGGAGGG---AGCUAGUAGCGGGGAGGCGACAAGCGCCAAGCGGCGCAAGGAUGACAACGAUGGUCCAUGCGGAAGCG-CAGGCGAUU .((.(((.......((((.(..((..(..---..((.((.((......)).))..(((((....)))))..))....)..)).).))))..((....)))-))))..... ( -32.30) >DroSec_CAF1 255 98 + 1 UCAAUGCUCGAUGA------GGCGGGCGG---UGGCUCCGCCGGAGGAGCAACGAGUGCAAAGAAACGCAAGGAUGA---CGAUAACCCAUCGGGCAGCAACAAGCAACC ....(((((((((.------((((..((.---..(((((......)))))..))..))).......(....).....---......).)))))))))((.....)).... ( -34.00) >DroSim_CAF1 267 98 + 1 UCAAUGCUCGAUGA------GGCGGGCGG---UGGCUCCGCCGGAGGAGCAACGAGUGCAAAGAAACGCAAGGAUGA---CGAUAAUCCAUCGGGCAGCAACAAGCAACC ....(((((((((.------.(((..((.---..(((((......)))))..))..))).......(....).....---........)))))))))((.....)).... ( -33.90) >DroEre_CAF1 669 101 + 1 UCGAUGCUCGAUGA------UGCGGGCGAUGAUGCAUCCGCCGGAGGAGCAACGAGUUCAAAGAGACGCAAGGAUGA---CGAUAAUCCAUCGGGCAGCAACAGGCAAUC ....((((((((..------(((((((((((...))).))))....((((.....)))).......)))).((((..---.....))))))))))))((.....)).... ( -32.50) >DroYak_CAF1 267 98 + 1 UCGAUGCUCGAUGA------UGCGGGCGG---UGCAUCCGCCGGAGGAGCAACGAGUGCAAAGAGACGCAAGGAUGA---CGAUAAUCCAUCGGGCAGCAACAGGCAAUC ....((((((((..------(((((((((---.....)))))......(((.....))).......)))).((((..---.....))))))))))))((.....)).... ( -34.60) >consensus UCAAUGCUCGAUGA______GGCGGGCGG___UGCCUCCGCCGGAGGAGCAACGAGUGCAAAGAAACGCAAGGAUGA___CGAUAAUCCAUCGGGCAGCAACAAGCAACC ....((((((((.........((((((((........)))))......(((.....))).......)))..((((..........))))))))))))((.....)).... (-23.16 = -24.33 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:30 2006