Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,560,421 – 7,560,520 |
Length | 99 |
Max. P | 0.622480 |
Location | 7,560,421 – 7,560,520 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 83.56 |
Mean single sequence MFE | -39.28 |
Consensus MFE | -23.88 |
Energy contribution | -24.16 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.31 |
Mean z-score | -2.74 |
Structure conservation index | 0.61 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.622480 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7560421 99 - 27905053 CCAUGGCCUUUGGUCUGCCCCUUUUCUGGAUUCAGAUUGACAGUGGGCGACGUUCCAUGAACGCCCAUUGUUGGACAUCCAGU-----------UGCGAACGG-GUGAAGU ....((((...)))).((((.(((.((((((...(.(..((((((((((............))))))))))..).))))))).-----------...))).))-))..... ( -34.40) >DroSec_CAF1 55525 99 - 1 CCAUGGCCUUUGGUCUGCCCCUUUUCUGGAUUCAGAUUGACAGUGGGCGCUGUUCCAUGAACGCCCAUUGUUGGUCAUCCAGU-----------UGCGAAGGG-GUGAAGU ....((((...)))).((((((((.((((((...(((..((((((((((............))))))))))..))))))))).-----------...))))))-))..... ( -45.80) >DroSim_CAF1 56474 99 - 1 CCAUGGCCUUUGGUCUGCCCCUUUUCUGGAUUCAGAUUGACAGUGGGCGCUGUUCCAUGAACGCCCAUUGUUGGUCAUCCAGU-----------UGCGAAGGG-GUGAAGU ....((((...)))).((((((((.((((((...(((..((((((((((............))))))))))..))))))))).-----------...))))))-))..... ( -45.80) >DroEre_CAF1 57780 99 - 1 CCAUGGCCUUUGGUCUUCCCCUUUUCUGGAUUCAGAUUGACGGUGGGCGAUGUUCCAUGAACGCCCAUUGUUGGCCAUCCAGU-----------UGCGAAGGG-GUGAAGU ....((((...))))..(((((((.((((((...(.(..((((((((((............))))))))))..)).)))))).-----------...))))))-)...... ( -38.00) >DroYak_CAF1 59051 99 - 1 CCAUGGCCUUUGGUCUUCCUCUUUUCUGGAUUCAGAUUGACAGCGGGCGAUGUUCCAUGAACGCCCAUUGUUGGCCAUCCAGU-----------UGCGAAGGG-GUGAAGU ....((((...))))..(((((((.((((((...(.(..((((.(((((............))))).))))..)).)))))).-----------...))))))-)...... ( -31.20) >DroAna_CAF1 66961 110 - 1 CCAUGGCCUUUGGCCAGCCUGGAUUCUG-AUUCGGAUUGGCCAUGUCGCAUGCUCGAUGAAUGGCCAUUGUCAGUCGACCACUCCAUAUCUCCAUAUGAAGGCUGACAAGU ...(((((..((((((..((((((....-))))))..)))))).((((......))))....)))))(((((((((((....))(((((....)))))..))))))))).. ( -40.50) >consensus CCAUGGCCUUUGGUCUGCCCCUUUUCUGGAUUCAGAUUGACAGUGGGCGAUGUUCCAUGAACGCCCAUUGUUGGUCAUCCAGU___________UGCGAAGGG_GUGAAGU ......((((((.............((((((...(.(((((((((((((............))))))))))))).)))))))..............))))))......... (-23.88 = -24.16 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:29 2006