Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,554,717 – 7,554,813 |
Length | 96 |
Max. P | 0.500000 |
Location | 7,554,717 – 7,554,813 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 81.30 |
Mean single sequence MFE | -21.64 |
Consensus MFE | -7.75 |
Energy contribution | -9.31 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.10 |
Mean z-score | -2.22 |
Structure conservation index | 0.36 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7554717 96 + 27905053 ACGAUGAUGUCUUAAUUUUAUGGCUCAUAGUCAGGAAGAAA----AGGCAU-UACU----UAUAUGCGCAUGAAGAAAAGAUGGAGUACAAAGUGUACUAAU-----------AAA ....(((((((((..((((.((((.....)))).))))..)----))))))-))..----........................(((((.....)))))...-----------... ( -17.90) >DroSec_CAF1 49797 100 + 1 ACGAUGAUGUCUUAAUUUUAUGGCUCAUAGUCAGGAAUAAA----AGGCAU-UCCGAAGAUAUAUGAGCAUGAAGAAAAGAUGGAGUACGAAGUGUACUAAU-----------AAA ........(((((..(((((((.(((((((((.(((((...----....))-)))...))).)))))))))))))..)))))..(((((.....)))))...-----------... ( -25.00) >DroSim_CAF1 50763 104 + 1 ACGAUGAUGUCUUAAUUUUAUGGCUCAUAGUCAGGAAUAAAAGAAAGGCAU-UCCUAAGAUAUAUGAGCAUGAAGAAAAGAUAGAGUACGAAGUGUAAUAAU-----------AAA .((((..((((((..(((((((.(((((((((((((((...........))-))))..))).)))))))))))))..))))))..)).))............-----------... ( -24.90) >DroEre_CAF1 52034 112 + 1 ACGAUGAUGUCUUAAUUUUAUGGCUCAUAGUCAGGAAGAAA----GGGCAUUUCCUAAAAUAUAUGGGCAUGAGGAAAAGUAUAAGUGGGAAGAGUAUUAAUGGAGGUACACGAAA .((..((((((((..((((.((((.....)))).))))..)----)))))))(((((...(((((...(.....)....)))))..)))))...(((((......))))).))... ( -20.90) >DroYak_CAF1 53134 100 + 1 ACGAUGAUGUCUUAAUUUUAUGGCUCAUAGUCGGGAAGAAA----AGGCAU-UCCAAAAAUAUAUGCACACGAAGAAAAGUAUUUUCGGGUAGUGUACUAAU-----------AAA .....((((((((..((((.((((.....)))).))))..)----))))))-)...........(((((.((((((......))))))....))))).....-----------... ( -19.50) >consensus ACGAUGAUGUCUUAAUUUUAUGGCUCAUAGUCAGGAAGAAA____AGGCAU_UCCUAAAAUAUAUGAGCAUGAAGAAAAGAUGGAGUACGAAGUGUACUAAU___________AAA ........(((((..(((((((.((((((....(((................))).......)))))))))))))..))))).................................. ( -7.75 = -9.31 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:28 2006