Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,547,330 – 7,547,432 |
Length | 102 |
Max. P | 0.611928 |
Location | 7,547,330 – 7,547,432 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 87.20 |
Mean single sequence MFE | -27.15 |
Consensus MFE | -22.95 |
Energy contribution | -22.63 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.10 |
Mean z-score | -1.46 |
Structure conservation index | 0.85 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.611928 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7547330 102 - 27905053 G-AUGGACUGACUCCCUCUUUCAUUUUUGUUUCCUCCUUUCGACACGCAACACAAAGCCGGCUGUUUUGCUGGCCGUCCGUGGUCCACUGAGCCAAUGCUCAU .-.(((((((((................((.((........)).))..........((((((......)))))).)))...)))))).(((((....))))). ( -26.70) >DroSec_CAF1 42544 102 - 1 G-ACGGACCGACUCCCUCUUCCGUUUCCGUUUCCCCCUUUCGACUCGCAACACAAAGCCGGCUGUUUUGCUGGCCGUCCGUGGUCCACUGAGCCACUGCUCAU .-..((((((((..........(((..((..((........))..)).))).....((((((......)))))).)))...)))))..(((((....))))). ( -29.80) >DroSim_CAF1 43441 102 - 1 G-AUGGACUGACUCCCUCUUCCGUUUCCGUUUCCCCCUUUCGACUCGCAACACAAAGCCGGCUGUUUUGCUGGCCGUCCGUGGUCCACUGAGCCACUGCUCAU .-.(((((((((..........(((..((..((........))..)).))).....((((((......)))))).)))...)))))).(((((....))))). ( -28.50) >DroEre_CAF1 44718 94 - 1 G-AUGGACU----C--CCUUCCAUUUCCGUUUC--CCUUUCUACUGCCAACACAAAGCCGGCUGUUUUGCUGGCCGUCCGUGGUCCACUGAGCCACUGCUCAU (-(((((..----.--...))))))........--..........((((.......((((((......))))))......))))....(((((....))))). ( -25.02) >DroYak_CAF1 45772 95 - 1 GAAUGGACU----U--CCAUCCAUUUCCGUUUC--CCUUUCGAUUGCCAACACAAAGCCGGCUGUUUUGCUGGCCGUCCGUGGUUCACUGGGCCACUGCUCAU (((((((..----.--...))))))).......--......((..((((.......((((((......))))))......))))))..(((((....))))). ( -25.72) >consensus G_AUGGACUGACUCCCUCUUCCAUUUCCGUUUCC_CCUUUCGACUCGCAACACAAAGCCGGCUGUUUUGCUGGCCGUCCGUGGUCCACUGAGCCACUGCUCAU ..((((((....................(((.................))).....((((((......)))))).)))))).......(((((....))))). (-22.95 = -22.63 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:26 2006