Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,101,632 – 1,101,722 |
Length | 90 |
Max. P | 0.538708 |
Location | 1,101,632 – 1,101,722 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 80.89 |
Mean single sequence MFE | -34.37 |
Consensus MFE | -22.88 |
Energy contribution | -25.10 |
Covariance contribution | 2.22 |
Combinations/Pair | 1.19 |
Mean z-score | -1.36 |
Structure conservation index | 0.67 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.538708 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1101632 90 + 27905053 GCUGUUGAAGGCGCGGCUGUUGUGCCUGGAAGCAGCUUUUCCCAGGCGUUGGACUGCCGACUCCUUCUUGUAACCUGGCGACAUAGCGAU (((((.(((((.(((((.(((.(((((((............)))))))...))).)))).).)))))((((......)))).)))))... ( -33.40) >DroSec_CAF1 35217 90 + 1 GCUGUUGAAGGCGCGGCUGUUCUGCCUGGAAGAAGCUUUUCCCAGGCGUUGGACGGCCGACUCCUUCUUGUAACUUGGCGGCAUAGCGAU (((((((((((.(((((((((((((((((.(((....))).)))))))..))))))))).).))))).........))))))........ ( -40.00) >DroSim_CAF1 35226 90 + 1 GCUGUUGAAGGCGCGGCUGUUGUGCCUGGAAGAAGCUUUUCCCAGGCGUUGGACGGCCGACUCCUUCUUGUAACUUGGCGGCAUAGCGAU (((((((((((.(((((((((.(((((((.(((....))).)))))))...)))))))).).))))).........))))))........ ( -37.70) >DroEre_CAF1 36737 90 + 1 GCUGUUGAAGGCGCGGCUGUUGUACUUGGAAGAAGCACUUCCCAGGCGUUGGACGGCCGACUGCUUUUUGUAGCCCGGCGGCAUCGCGAU (((((((..(((.(((((((((..((((((((.....))).)))))..)..))))))))..(((.....)))))))))))))........ ( -33.80) >DroYak_CAF1 49588 90 + 1 GCUGUUGAAGGCGCGGCUGUUGUGCUUGGAAGAAGCACUUCCCAGGCGUUGGACGGCCGACUCCUUUUUGUAACCCGGCGGCAUCGCGAU (((((((((((.(((((((((.((((((((((.....))).)))))))...)))))))).).)))).........)))))))........ ( -35.60) >DroAna_CAF1 33135 87 + 1 GCUAUUGUUGGCACGAUGGGA---GCGAGAAUAGGGCUUGCCCAGACGCUGUACGGCUGACUCCUUGGAGUAGUUCUUGGGCAUUUUGAU .(((((((....)))))))((---((.........))))(((((((((((....)))..((((....)))).)))..)))))........ ( -25.70) >consensus GCUGUUGAAGGCGCGGCUGUUGUGCCUGGAAGAAGCUUUUCCCAGGCGUUGGACGGCCGACUCCUUCUUGUAACCCGGCGGCAUAGCGAU (((((((((((.(((((((((.(((((((............)))))))...)))))))).).))))).........))))))........ (-22.88 = -25.10 + 2.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:24 2006