Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,539,111 – 7,539,227 |
Length | 116 |
Max. P | 0.615592 |
Location | 7,539,111 – 7,539,227 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 92.49 |
Mean single sequence MFE | -25.76 |
Consensus MFE | -20.04 |
Energy contribution | -20.16 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.12 |
Mean z-score | -1.59 |
Structure conservation index | 0.78 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.615592 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7539111 116 - 27905053 GCUGCAGAAUUAAUGGACGAUGGAAUUUUCAAGUGAAUGCCUUACGAUGUGUGAACUUUCGCCCGGGGUAAAGUUAAAGAGAGGAAAAUAUUAAUAAAUAGCUGCAGCAAA-AAGGG (((((((............((....(((((...(((.((((((.(((...(....)..)))...))))))...)))..)))))....))............)))))))...-..... ( -23.85) >DroSec_CAF1 34397 106 - 1 GCUGCAGAAUUAAUGAACGAUGGAAUUUUC---------CCUUACGAUGUGUGAACU-UCGCCCGGGGAAAAGUUAAAGUGAGGAAAAUAUUAAUAAAUAGCUGCAGCAAA-AAGGG (((((((..................(((((---------(((..(((.((....)).-)))...))))))))(((((.((.......)).)))))......)))))))...-..... ( -26.90) >DroSim_CAF1 35306 115 - 1 GCUGCAGAAUUAAUGGACGAUGGAAUUUUCAAGUGAAUGCCUUACGAUGUGUGAACU-UCGCCCGGGGUAAAGUUAAAGUGAGGAAAAUAUUAAUAAAUAGCUGCAGCAAA-AAGGG (((((((.(((((((...((........)).........((((((........((((-(..((...))..)))))...))))))....)))))))......)))))))...-..... ( -27.60) >DroEre_CAF1 36346 115 - 1 GCUGCAGAAUUAAUGGACGAUGGAAUUUUCAAGUGAAUACCUUACGAUGUGUGAACU-UUGCCCGGGG-AAAGUUAAGGAGAGGAAAAUAUUAAUAAAUAGCUGCAGCAAAAAAGGG (((((((.(((((((..((..((.((((......)))).))...)).......((((-((.(....).-)))))).............)))))))......)))))))......... ( -24.10) >DroYak_CAF1 34560 115 - 1 GCUGCAGAAUUAAUGGACGAUGGAAUUUUCAAGUGAAUACCCUACGAUGUGUGAACU-UUGCCUGGGGUAAAGUUAAAGAGAGGAAAAUAUUAAUAAAUAGCUGCAGCAAA-AUGGG (((((((............((....(((((...(((.((((((((((.((....)).-)))..)))))))...)))..)))))....))............)))))))...-..... ( -26.35) >consensus GCUGCAGAAUUAAUGGACGAUGGAAUUUUCAAGUGAAUACCUUACGAUGUGUGAACU_UCGCCCGGGGUAAAGUUAAAGAGAGGAAAAUAUUAAUAAAUAGCUGCAGCAAA_AAGGG (((((((.(((((((...((........)).......((((((.(((...(....)..)))...))))))..................)))))))......)))))))......... (-20.04 = -20.16 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:25 2006