Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,539,003 – 7,539,093 |
Length | 90 |
Max. P | 0.505263 |
Location | 7,539,003 – 7,539,093 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 85.61 |
Mean single sequence MFE | -23.56 |
Consensus MFE | -17.86 |
Energy contribution | -18.46 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.09 |
Mean z-score | -1.50 |
Structure conservation index | 0.76 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.505263 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7539003 90 + 27905053 CCCAUUCAGAGCGAUCAAUGGAUGUUUUCCUUAUAUCUCG--------------------AAAUAAUAACUGAGUGGCCAGGCAAACAUGUUUGUUCCACUCAAGGGCAU (((.(((.(((........(((.....)))......))))--------------------))........(((((((.((((((....))))))..))))))).)))... ( -24.24) >DroSec_CAF1 34289 90 + 1 CCCAUUCAGAGCGAUCAGUGGAUGUUUUCCUUAUAUCUCG--------------------AAAUAAUAAGUGAGUGGCCAGGCAAACAUGUUUGUCCCACUCAAGGGCAU (((.(((.(((........(((.....)))......))))--------------------))........(((((((.((((((....))))))..))))))).)))... ( -24.64) >DroSim_CAF1 35198 90 + 1 GCCAUUCAGAGCGAUCAAUGUAUGUUUUCCUUAUAUCUCG--------------------AAAUAAUAAGUGAGUGGCCAGGCAAACAUGUUUGUCCCACUCAAGGGCAU (((.(((.(((........(((((.......)))))))))--------------------))........(((((((.((((((....))))))..)))))))..))).. ( -22.60) >DroEre_CAF1 36234 90 + 1 CCCAUUCAGAGCGAUCAAUGGAUGUUUUCCUUGUAUUUCG--------------------AAAUAAUAACUGAGUGCCCAGGCAAACGUGUUUGUCCCACUCAAGGGCAU (((........(((.(((.(((.....))))))....)))--------------------..........((((((....((((((....)))))).)))))).)))... ( -22.10) >DroYak_CAF1 34432 110 + 1 GCCAUUCGUAGCGAUCAAUGGAUGUUUUCCUUAUAUCUCGAAAUAAUAACGUAUAUCUCGAAAUAAUAACUGAGUGAAGAGGCAAACAUGUUUGUUCCACUCAAGGGCAU (((((((((........)))))))....((((.(((.((((.(((........))).)))).)))......(((((((.(((((....))))).)).))))))))))).. ( -24.20) >consensus CCCAUUCAGAGCGAUCAAUGGAUGUUUUCCUUAUAUCUCG____________________AAAUAAUAACUGAGUGGCCAGGCAAACAUGUUUGUCCCACUCAAGGGCAU (((.......(.(((....(((.....)))....))).)...............................(((((((...((((((....))))))))))))).)))... (-17.86 = -18.46 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:24 2006