Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,536,698 – 7,536,791 |
Length | 93 |
Max. P | 0.901061 |
Location | 7,536,698 – 7,536,791 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 66.89 |
Mean single sequence MFE | -25.93 |
Consensus MFE | -14.42 |
Energy contribution | -13.95 |
Covariance contribution | -0.47 |
Combinations/Pair | 1.33 |
Mean z-score | -1.63 |
Structure conservation index | 0.56 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.901061 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7536698 93 - 27905053 AAAUG-------CGGGAUGAGCUCUGAA---------AGGGCGUAGCCCGGGACUUCUGGAUAAAAAA------AAAAAAAACAAAACAGCUCGCC-GGGAUGUGAAAGCUCUUGG ....(-------((((.((.((((....---------.)))).....((((.....))))........------.............)).)))))(-((((.((....))))))). ( -23.00) >DroSec_CAF1 32024 70 - 1 AAAUG-------CGGGAUGAGCUCUGAA---------AGGGCGUAGCCCGGGA-----------------------------CAAAACAGCUCGCC-GGGAUGUGAAAGCUCUUGG ...(.-------((((....((((....---------.))))....)))).).-----------------------------............((-((((.((....)))))))) ( -21.50) >DroSim_CAF1 32939 70 - 1 AAAUG-------CGGGAUGAGCUCUGAA---------AGGGCGUAGCCCGGGA-----------------------------CAAAACAGCUCGCC-GGGAUGUGAAAGCUCUUGG ...(.-------((((....((((....---------.))))....)))).).-----------------------------............((-((((.((....)))))))) ( -21.50) >DroEre_CAF1 33907 86 - 1 AAAUG-------CGGGAUGAGCCCUGAA---------AGGGCGUAGCCCGGGACUUGAGGA-------------AAAAAAAACAAAACAUCUCCCC-GGGAUGUGAAAGCCCUUGG .....-------((((......)))).(---------(((((.((.((((((....((((.-------------...............)))))))-)))...))...)))))).. ( -25.99) >DroYak_CAF1 32048 100 - 1 AAAUG-------CGGGAUGAGCUCUGAA---------AGGGCGUAGCCCGGGACUUGAGAACUAAAAAAAAAAUAAAAAAAACAAAACAGCUCCCGAGGGAUGUGAAAGCACUUGG ...(.-------((((....((((....---------.))))....)))).)..(..((................................(((....)))(((....)))))..) ( -20.50) >DroAna_CAF1 39907 110 - 1 AAAUGCGGAAAGCGGGAUGAGCUGCAAACUCAUCCCAGGCGCUUAGUCUGAAACUUUUUGCAAGGGAG-----CAGUCUAUCCGAGACGUCUCUCC-GGGAUGUGCAUCCCCUCGA ...(((((((((.((((((((.......))))))))((((.....))))....))))))))).(((((-----..((((.....))))..))).))-(((((....)))))..... ( -43.10) >consensus AAAUG_______CGGGAUGAGCUCUGAA_________AGGGCGUAGCCCGGGACUU__GGA_____________AAAAAAAACAAAACAGCUCGCC_GGGAUGUGAAAGCUCUUGG ............((((....(((((............)))))....))))....................................(((.(((....))).)))............ (-14.42 = -13.95 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:23 2006