Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,531,817 – 7,531,907 |
Length | 90 |
Max. P | 0.541257 |
Location | 7,531,817 – 7,531,907 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 76.09 |
Mean single sequence MFE | -28.28 |
Consensus MFE | -14.67 |
Energy contribution | -15.48 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.22 |
Mean z-score | -1.68 |
Structure conservation index | 0.52 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.541257 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7531817 90 - 27905053 GGUAU------GCCUUGGAGGACAUUGCUGGCGAAAAACCCUUGGCAUUCAGCCUAACUCCGAGGAUACGGCCAAAUACUUUUGGCAAGCUCCCGA .((((------.((((((((......((((((.((......)).))...))))....)))))))))))).((((((....)))))).......... ( -31.00) >DroSec_CAF1 27391 90 - 1 GGUAU------GCCUUGGAGGACAUUGCUGGCGAAAAACCCUUGGCAUUCAGCCUAACUCCGAGGAUACGGCCAAAUACUUUUGGCAAGCUCCCGA .((((------.((((((((......((((((.((......)).))...))))....)))))))))))).((((((....)))))).......... ( -31.00) >DroSim_CAF1 28250 90 - 1 GGUAU------GCCUUGGAGGGCAUUGCUGGCGAAAAACCCUUGGCAUUCAGCCUAACUCCGAGGAUACGGCCAAAUACUUUUGGCAAGCUCUCGA .((((------.(((((((((((..(((..(.(......).)..)))....)))...)))))))))))).((((((....)))))).......... ( -33.10) >DroEre_CAF1 27439 96 - 1 GGUAUGCCUAUGCCUUGGAGGACAUUGCUGGUGAAAAACCCUUGGCAGUCAGCCUAACUCCGGCGAUCCGGCCAAAUACUUUUGGCAAGCUUUCGA (((((....)))))(((((((...((((((((.....))).(((((.(((.(((.......))))))...)))))........))))).))))))) ( -29.10) >DroYak_CAF1 27204 90 - 1 GGUAU------GCCUUGGAGGACAUUGCUGGCGAAGAACCCUUGGCAUUCAGCCUAACUCCGACGAUCCGGCCAAAUACUUUUGGCAAGCUGGCGA ....(------(((((((((......((((((.(((....))).))...))))....)))))).......((((((....)))))).....)))). ( -29.00) >DroAna_CAF1 35159 77 - 1 GUUAC------AGCUC-UAGGAUC---UUGGCCAAGUGCCUUUGAACUU------UGCU---AAGAGCCAAAACAAUUUUUUUGUCAUUCAUUUUG .....------.....-..((.((---(((((.((((........))))------.)))---)))).))...((((.....))))........... ( -16.50) >consensus GGUAU______GCCUUGGAGGACAUUGCUGGCGAAAAACCCUUGGCAUUCAGCCUAACUCCGAGGAUACGGCCAAAUACUUUUGGCAAGCUCUCGA (((........)))((((((......((((((.((......)).))...))))....)))))).......((((((....)))))).......... (-14.67 = -15.48 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:19 2006