Locus 2814

Sequence ID 3R_DroMel_CAF1
Location 7,530,733 – 7,530,846
Length 113
Max. P 0.670171
window4550

overview

Window 0

Location 7,530,733 – 7,530,846
Length 113
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 88.32
Mean single sequence MFE -27.52
Consensus MFE -22.38
Energy contribution -23.30
Covariance contribution 0.92
Combinations/Pair 1.11
Mean z-score -1.53
Structure conservation index 0.81
SVM decision value 0.29
SVM RNA-class probability 0.670171
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7530733 113 + 27905053
UAC-AAUGUUCUUCAAUUGAUUUGUCUAAAAUCUGUUUCUGGAAGACUUUGCACCCGAGUGCUUUGUGUAUACCUUUGUGCUUUGCGUUUUCCAGGACGCAGGCACAAAGACAG
(((-((...((((((((.(((((.....))))).)))....)))))....((((....)))).))))).....((((((((((.((((((....)))))))))))))))).... ( -33.40)
>DroSec_CAF1 26333 108 + 1
UAA-AAUGUUCUUCAACUGAUUUGUCUUAAAUCUGUUUCUGGAAGACUUUGCACCCAAGUGCUUUGUGCAUACCU-----CUUCGCGUUUUCCAGGACGCAGGCACAAAGACAG
...-..................((((((...((((((((((((((((...((((....)))).....((......-----....))))))))))))).)))))....)))))). ( -30.10)
>DroSim_CAF1 27192 108 + 1
UAC-AAUGUUCUUCAACUGAUUUGUCUAAAAUCUGUUUCUGGAAGACUGUGCACCCGAGUGCUUUGCGCAUACCU-----CUUCGCGUUUUCCAGGACGCAGGCACAAAGACAG
...-..................(((((....((((((((((((((((...((((....))))...(((.......-----...)))))))))))))).))))).....))))). ( -30.40)
>DroEre_CAF1 26385 108 + 1
UAC-AAUCUCCUUCAACAGAUUUGUCUAAAAUCAGUUUCUGGUAUACUUUGCGCCCAAGUACAUAGUGCUUACCU-----CUUCGCGUUUUUCAGGACGCAGCCACAAAGACAG
...-.....((...(((.(((((.....))))).)))...))....(((((.((..((((((...))))))....-----....((((((....)))))).))..))))).... ( -20.60)
>DroYak_CAF1 26128 109 + 1
AACUGAUGUUCUUCAACUGAUUUGUCUAAAAUCUGUUUCUGGAAUACUUAGCACCCGAGUACUUUGAGCAUACCU-----CUUCGCGUUUUCCAGGACGCAGGCACAAAGACAG
..((((((((((..(((.(((((.....))))).)))...)))))).)))).......((.(((((.((......-----....((((((....))))))..)).))))))).. ( -23.10)
>consensus
UAC_AAUGUUCUUCAACUGAUUUGUCUAAAAUCUGUUUCUGGAAGACUUUGCACCCGAGUGCUUUGUGCAUACCU_____CUUCGCGUUUUCCAGGACGCAGGCACAAAGACAG
......................(((((....((((((((((((((((...((((....)))).....((...............))))))))))))).))))).....))))). (-22.38 = -23.30 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:18 2006