Locus 2813

Sequence ID 3R_DroMel_CAF1
Location 7,529,627 – 7,529,723
Length 96
Max. P 0.999238
window4549

overview

Window 9

Location 7,529,627 – 7,529,723
Length 96
Sequences 3
Columns 97
Reading direction reverse
Mean pairwise identity 67.38
Mean single sequence MFE -11.30
Consensus MFE -6.84
Energy contribution -7.73
Covariance contribution 0.89
Combinations/Pair 1.15
Mean z-score -2.04
Structure conservation index 0.61
SVM decision value 3.45
SVM RNA-class probability 0.999238
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7529627 96 - 27905053
-AGCAUUUUCUAGGCCUACUAACAAGUUUAGAAAAUACAUACCAAAGCUAUGGACAUAUACCAAAAAUCAUUAUCCAAACAGCAACUCUUUAAACUA
-.(((((((((((((..........))))))))))).....(((......)))............................)).............. ( -12.70)
>DroSec_CAF1 25224 77 - 1
-AGUAUUUUCUAGGCCUACUAACAAGUUUAGAAAAUAUAUACCAAAAAUA-------------AAUAAUACCAUCCAAACAGCAAAUCUUU------
-.(((((((((((((..........)))))))))))))............-------------............................------ ( -10.90)
>DroEre_CAF1 25265 84 - 1
AAGUAUUUUCUGGGCCUACUAACAAUUUUAUAAAUUACAUAGCAAAGAUAUG----UAUAUCGGUAAUAUGUAUCCAAACAGGAAC---------UA
......((((((((....))...............((((((.....((((..----..)))).....))))))......)))))).---------.. ( -10.30)
>consensus
_AGUAUUUUCUAGGCCUACUAACAAGUUUAGAAAAUACAUACCAAAGAUAUG____UAUA_C_AAAAUAACUAUCCAAACAGCAACUCUUU____UA
..(((((((((((((..........)))))))))))))........................................................... ( -6.84 =  -7.73 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:17 2006