Locus 2811

Sequence ID 3R_DroMel_CAF1
Location 7,518,821 – 7,518,912
Length 91
Max. P 0.983472
window4546 window4547

overview

Window 6

Location 7,518,821 – 7,518,912
Length 91
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 92.67
Mean single sequence MFE -21.30
Consensus MFE -19.57
Energy contribution -20.23
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.34
Structure conservation index 0.92
SVM decision value 1.17
SVM RNA-class probability 0.925073
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7518821 91 + 27905053
GUACUUCGGUGGUACUUUUGGCUUUAAAGUCACCACCCAGUUUAGACAAUCACUUUGUUUACCAUUUCGAAAACUAAAUUGGAUUAUCCAC
....((((((((((((((.......))))).)))))).....(((((((.....))))))).......)))........(((.....))). ( -20.00)
>DroSec_CAF1 14481 91 + 1
GUACUUCGGUGGUACUUUUGGCUUUAAAGUCACCACCGAGCUUAGACAAUCAAUUUGUUUACUGUUACAAAAACCAAAUUGGAUUAUCCUC
(((.((((((((((((((.......))))).)))))))))..(((((((.....)))))))....))).....((.....))......... ( -23.10)
>DroSim_CAF1 14973 91 + 1
GUACUUCGGUGGUACUUAUGGCUUUAAAGUCACCACCGAGCUUAGACAAUCAAUUUGUUUACUGUUUCGAAAACCAAAUUGGAUUAUCCUC
....(((((((((((((.........)))).)))))))))....((.(((((((((((((.(......).))).)))))).)))).))... ( -20.80)
>consensus
GUACUUCGGUGGUACUUUUGGCUUUAAAGUCACCACCGAGCUUAGACAAUCAAUUUGUUUACUGUUUCGAAAACCAAAUUGGAUUAUCCUC
....((((((((((((((.......))))).)))))))))..(((((((.....)))))))...................((.....)).. (-19.57 = -20.23 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 7,518,821 – 7,518,912
Length 91
Sequences 3
Columns 91
Reading direction reverse
Mean pairwise identity 92.67
Mean single sequence MFE -27.43
Consensus MFE -25.01
Energy contribution -25.57
Covariance contribution 0.56
Combinations/Pair 1.06
Mean z-score -3.71
Structure conservation index 0.91
SVM decision value 1.94
SVM RNA-class probability 0.983472
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7518821 91 - 27905053
GUGGAUAAUCCAAUUUAGUUUUCGAAAUGGUAAACAAAGUGAUUGUCUAAACUGGGUGGUGACUUUAAAGCCAAAAGUACCACCGAAGUAC
.(((((((((..((((.((((.(......).)))).))))))))))))).(((.(((((((.((((.......)))))))))))..))).. ( -24.90)
>DroSec_CAF1 14481 91 - 1
GAGGAUAAUCCAAUUUGGUUUUUGUAACAGUAAACAAAUUGAUUGUCUAAGCUCGGUGGUGACUUUAAAGCCAAAAGUACCACCGAAGUAC
..((((((((.((((((....(((...)))....))))))))))))))..(((((((((((.((((.......)))))))))))).))).. ( -29.20)
>DroSim_CAF1 14973 91 - 1
GAGGAUAAUCCAAUUUGGUUUUCGAAACAGUAAACAAAUUGAUUGUCUAAGCUCGGUGGUGACUUUAAAGCCAUAAGUACCACCGAAGUAC
..((((((((.((((((.(((.(......).)))))))))))))))))..(((((((((((.(((.........))))))))))).))).. ( -28.20)
>consensus
GAGGAUAAUCCAAUUUGGUUUUCGAAACAGUAAACAAAUUGAUUGUCUAAGCUCGGUGGUGACUUUAAAGCCAAAAGUACCACCGAAGUAC
..((((((((.(((((.((((.(......).)))))))))))))))))..(((((((((((.((((.......)))))))))))).))).. (-25.01 = -25.57 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:15 2006