Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,518,652 – 7,518,747 |
Length | 95 |
Max. P | 0.831475 |
Location | 7,518,652 – 7,518,747 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 88.24 |
Mean single sequence MFE | -34.31 |
Consensus MFE | -29.83 |
Energy contribution | -30.82 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.72 |
Structure conservation index | 0.87 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.831475 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7518652 95 + 27905053 -----------------GUGAUUUGUAUGCAAUGUGACUUCAUUGGGACCACCGAAUGGACCUGGGCAUGUGUUGCCUUUCCAGCUGCACAAAUUCGCACGCAAAUCACGAC -----------------((((((((..(((..((((......((((.....)))).((((...(((((.....))))).))))....)))).....)))..))))))))... ( -33.70) >DroSec_CAF1 14299 112 + 1 CCGUUUAGGAAACCUCCGUGAUUUGUAUGCAAUGUGACUUCAUUGGGACCACCGAAUGGACCUGGGCAUGUGUUGCCUUUCCAGCUGCACAAAUUCGCACGCAAAUCACGAC ((.....)).......(((((((((..(((..((((......((((.....)))).((((...(((((.....))))).))))....)))).....)))..))))))))).. ( -36.80) >DroSim_CAF1 14791 112 + 1 CCGUUUAGGAAACCUCCGUGAUUUGUAUGCAAUGUGACUUCAUUGGGACCACCGAAUGGACCUGGGCAUGUGUUGCCUUUCCAGCUGCACAAAUUCGCACGCAAAUCACGAC ((.....)).......(((((((((..(((..((((......((((.....)))).((((...(((((.....))))).))))....)))).....)))..))))))))).. ( -36.80) >DroEre_CAF1 14402 112 + 1 CCGUUUAGGAUACCCCCGUGAUACGUAUGCAAUGUGACUUCAUUGGUACCACCGAAUGGACCUGGGAAUGUGGUGCCUUUCCAGCUGGGGAAAUUCGCACGCAAAUCACGAC ((.....)).......((((((..(..(((((((......))))((((((((.................))))))))(((((......)))))...)))..)..)))))).. ( -29.93) >consensus CCGUUUAGGAAACCUCCGUGAUUUGUAUGCAAUGUGACUUCAUUGGGACCACCGAAUGGACCUGGGCAUGUGUUGCCUUUCCAGCUGCACAAAUUCGCACGCAAAUCACGAC ................(((((((((..(((............((((.....)))).((((...(((((.....))))).)))).............)))..))))))))).. (-29.83 = -30.82 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:13 2006