| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,099,971 – 1,100,085 |
| Length | 114 |
| Max. P | 0.718295 |
| Location | 1,099,971 – 1,100,085 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 77.97 |
| Mean single sequence MFE | -24.05 |
| Consensus MFE | -19.93 |
| Energy contribution | -19.98 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.718295 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1099971 114 - 27905053 UU-GCACUAAUUCUUGUUUUAUAACACAUACCUUAAUCUCGUGUAGGUAUUUGGUGCCCUCACCUCCUGCUCACUGCAUGUGUCGGAUCACUUUUACGGCACCGGUGAGUCCCUG ..-(((((((....((((....)))).((((((...........))))))))))))).((((((...(((.....))).((((((...........)))))).))))))...... ( -32.20) >DroSim_CAF1 33550 99 - 1 UU-GCACUAAUUCUUGUU---------------UAAUCUCGUGUAGGUAUUUGGUGCCCUCACCUCCUGCUCACUGCAUGUGUCGGAUCACUUUUACGGCACCGGUGAGUCCCUG ..-(((((((..((((..---------------(......)..))))...))))))).((((((...(((.....))).((((((...........)))))).))))))...... ( -27.70) >DroEre_CAF1 35227 95 - 1 UU-UCACA-AUUCUUAUU------------------GCUCAUUUAGGUAUUUGGUGCCCUGACCUCCUGCUCACUGCAUGUGUCGGACCACUUUUACGGCACCGGCGAGUCCCUG ..-...((-((....)))------------------)......((((.(((((((((((((((..(.(((.....))).).)))))...........))))))...)))).)))) ( -21.80) >DroYak_CAF1 47996 96 - 1 UU-UCACAAAUUCUUUUU------------------UCUAAUUUAGGUAUUUGGUGCCUUGACCUCCUGCUCACUGCAUGUGUCGGACCACUUUUACGGCACCGGUGAGUCCCUG ..-...............------------------.......((((.....(((......)))....((((((((...((((((...........)))))))))))))).)))) ( -22.30) >DroAna_CAF1 31845 97 - 1 UCUAUAAAAAUAUAUAUU------------------UUGCUUUUAGGUAUUUGGUGCUCUGACCUCCUGCUCGCUGCAUGUUUCCGAUCACUUUUACGGUACCGGCGAGUCCCUG ..................------------------.......((((.....(((......)))....((((((((...((..(((..........))).)))))))))).)))) ( -17.80) >DroPer_CAF1 36682 95 - 1 CCUGUAUAUAUUUA-------------------UA-UUUUCUGAAGGUAUUUGGUGCCCUGACCUCCUGCUCGCUGCAUGUGUCGGAUCAUUUCUAUGGCACCGGCGAGUCCCUG ...(((((....))-------------------))-).......(((.....(((......)))....((((((((...((((((((.....)))..))))))))))))).))). ( -22.50) >consensus UU_GCACAAAUUCUUAUU__________________UCUCAUGUAGGUAUUUGGUGCCCUGACCUCCUGCUCACUGCAUGUGUCGGAUCACUUUUACGGCACCGGCGAGUCCCUG ............................................(((.....(((......)))....((((((((...((((((...........)))))))))))))).))). (-19.93 = -19.98 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:23 2006