Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,513,273 – 7,513,363 |
Length | 90 |
Max. P | 0.922451 |
Location | 7,513,273 – 7,513,363 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 66.83 |
Mean single sequence MFE | -22.35 |
Consensus MFE | -6.23 |
Energy contribution | -7.48 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.08 |
Mean z-score | -2.39 |
Structure conservation index | 0.28 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922451 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7513273 90 - 27905053 ---GGUUUUCACAAUCUAAUUGGAG--AACUUUUUUUGGUGUAGACUGGCGAUAAGUA--------GUAUCUUCAAUUUAUUUAUAGCCAGUACAAUAUCAAU ---(((((((.((((...)))))))--))))....(((((((.(((((((.(((((((--------(..........)))))))).)))))).).))))))). ( -26.40) >DroSec_CAF1 8961 91 - 1 CGAAGAAGGCGC--CAUAAUUGGAG--GCCUUUUUUCCGCGUAGACUGGCGAUAAGUA--------GUAUCUUCAAUUUAUUUAUAGCCAGUUCACUACUAAU .(((((((((.(--((....)))..--)))))))))....((..((((((.(((((((--------(..........)))))))).))))))..))....... ( -31.30) >DroSim_CAF1 9311 91 - 1 CGAAGAAGUCGC--CAUAAUUGGAG--GCCUUUUUUCCGCGUAGACUGGCGAUAAGUA--------GUAUCUUCAAUUUAUUUAUAGCCAGUUCACUACUAAU .(((((((((.(--((....))).)--))..))))))...((..((((((.(((((((--------(..........)))))))).))))))..))....... ( -26.40) >DroEre_CAF1 9025 91 - 1 CCUUUAAGGCGC--CAUAAUUGGGA--GACAUUUUUACGCAUAGACUGGCGAUAAGUA--------GUAUCUUCAAUUUAUUUAUAGCCAAUACACUAUUAUU .......(((..--.((((...(((--((.((((((((((........))).)))).)--------)).)))))...)))).....))).............. ( -16.00) >DroYak_CAF1 9033 71 - 1 -----AAGGCCC--CAUAAUUGGG-----------------UAGCUUGGCGAUAAGUA--------GUAUCUUCAUUGUAUUUAUAGCCAGCACACUAUUAUU -----.....((--((....))))-----------------..(((.(((.(((((((--------.((.......))))))))).))))))........... ( -16.80) >DroPer_CAF1 5272 92 - 1 ------AAUUAC----UGUUUGUCGGUGUUUGUGUUCGGUUUGGACU-GCGAUAACUAAUCGUAAAAUAUCUUCAAUUUACUUAUAACAUUGGCACAAUAAAA ------......----((((((((((((((.((((((.....))))(-(((((.....))))))...............))....)))))))))).))))... ( -17.20) >consensus ____GAAGGCGC__CAUAAUUGGAG__GACUUUUUUCCGCGUAGACUGGCGAUAAGUA________GUAUCUUCAAUUUAUUUAUAGCCAGUACACUAUUAAU ............................................((((((.(((((((....................))))))).))))))........... ( -6.23 = -7.48 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:09 2006