Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,504,814 – 7,504,922 |
Length | 108 |
Max. P | 0.753695 |
Location | 7,504,814 – 7,504,922 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 76.40 |
Mean single sequence MFE | -37.73 |
Consensus MFE | -20.19 |
Energy contribution | -20.75 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.14 |
Mean z-score | -1.83 |
Structure conservation index | 0.54 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.753695 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7504814 108 + 27905053 AGGGCGAGGCCAUGGGUGGGUCGUGGAGCAGUCCGCUGGCGGACGAUGUGGAGUUGUGGUUGUGGUGCAGGUGGUGCUCGGCGACGCCGUUGCUAUCGAAAGUGGUAA ..(((....(((....)))(((((.(((((..(((((.((((((.(((......))).)))....))).)))))))))).)))))))).((((((.(....))))))) ( -41.50) >DroPse_CAF1 524 90 + 1 AGGGCGAGGCCAU---UGAGCUGUUGCGAUGGCCGCUGUUAGAAGUGGUGUAGUUAU---------------UGUGUUCGGCGUCGCCGUUGCUAUCGAAAGUGGUAA ..(((((.(((..---.((((....((((((((((((......)))))).....)))---------------)))))))))).))))).((((((.(....))))))) ( -34.40) >DroSec_CAF1 536 108 + 1 AGGGCGAGGCCAUGGGUGGGUCGUGGAGCUGUCCGCUGGCGGACGAUGUGGAGUUGUGGUUGUGGUGCAGGUGGUGUUCGGCGACGCCGUUGCUAUCGAAAGUGGUAA ..(((....(((....)))(((((.((((...(((((.((((((.(((......))).)))....))).))))).)))).)))))))).((((((.(....))))))) ( -39.00) >DroSim_CAF1 536 108 + 1 AGGGCGAGGCCAUGGGUGGGUCGUGGAGCUGUCCGCUGGCGGACGAUGUGGAGUUGUGGUUGUGGUGCAGGUGGUGUUCGGCGACGCCGUUGCUAUCGAAAGUGGUAA ..(((....(((....)))(((((.((((...(((((.((((((.(((......))).)))....))).))))).)))).)))))))).((((((.(....))))))) ( -39.00) >DroAna_CAF1 585 105 + 1 AGGGCGAGGCCAUGGAAAGGUUGUGA---UGCCCGCCGCCGGACGUGGUGCUGUGGUAGUGUUGGUUCUGGUAGUGCUCGGUGUCGCCGUUACUAUCGAAAGUGGUAA ..(((((.(((.......(((.....---.)))(((..(((((..(((..(((...)))..)))..)))))..)))...))).))))).((((((.(....))))))) ( -38.10) >DroPer_CAF1 524 90 + 1 AGGGCGAGGCCAU---UGAGCUGUUGCGAUGGCCGCUGUUAGAAGUGGUGUAGUUAU---------------UGUGUUCGGCGUCGCCGUUGCUAUCGAAAGUGGUAA ..(((((.(((..---.((((....((((((((((((......)))))).....)))---------------)))))))))).))))).((((((.(....))))))) ( -34.40) >consensus AGGGCGAGGCCAUGGGUGGGUCGUGGAGCUGUCCGCUGGCGGACGAGGUGGAGUUGUGGUUGUGGUGCAGGUGGUGUUCGGCGACGCCGUUGCUAUCGAAAGUGGUAA ..((((..(((...........(((((....))))).....(((........)))........................)))..)))).((((((.(....))))))) (-20.19 = -20.75 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:03 2006