Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,503,682 – 7,503,783 |
Length | 101 |
Max. P | 0.624624 |
Location | 7,503,682 – 7,503,783 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 83.26 |
Mean single sequence MFE | -30.12 |
Consensus MFE | -19.46 |
Energy contribution | -20.68 |
Covariance contribution | 1.22 |
Combinations/Pair | 1.05 |
Mean z-score | -2.32 |
Structure conservation index | 0.65 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.624624 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7503682 101 + 27905053 AGAAGGUUGUCGGUGUCCGUGGAGUCGCACGUGCGACAAAUCACCGGCAGCUUCAUGGCGAACAAAUUUGUUUUGG-CCAAUUGAAAGCUUUU-UUAAUUUUA (((((((((((((((((....))(((((....)))))....))))))))))(((((((((((((....)))))..)-)))..))))..)))))-......... ( -35.30) >DroVir_CAF1 3655 90 + 1 UAUAGUUUAUCUGUGUCCCUUGCAUCGCAAGUACGACACAUGACGGGCAGCUUCAUUUUA----------UUUCGAUUUAAUUAACA--UUUA-AUACAUUUA ....(((..((((((((.(((((...)))))...)))))).))..)))............----------.................--....-......... ( -17.00) >DroSec_CAF1 3007 101 + 1 AGAAGGUUGUCGGUGUCCGUGGAGUCGCACGUACGACAAAUCACCGGCAGCUUCAUGGCGAACAAAUUUGUUUUGG-CCAAUUGAAAGCUUGU-UUAAUUUUA .((((.(((((((((((....))((((......))))....))))))))))))).(((((((((....)))))..)-))).............-......... ( -30.90) >DroSim_CAF1 3008 101 + 1 AGAAGGUUGUCGGUGUCCGUGGAGUCGCACGUGCGACAAAUCACCGGCAGCUUCAUGGCGAACAAAUUUGUUUUGG-CCAAUUGAAAGCUUUU-UUAAUUUUA (((((((((((((((((....))(((((....)))))....))))))))))(((((((((((((....)))))..)-)))..))))..)))))-......... ( -35.30) >DroEre_CAF1 2998 102 + 1 AGAAGGUUAUCGGUGUCCGUGGAGUCGCACGUGCGACAAAUCACCGGCAGCUUCAUGGCGAACAAAUUUGUUUUGA-CCAAUUGAAAGCUUUUUUUAAUUUUA ((((((((.(((.((((.((((.(((((....)))))...)))).)))).).(((..(((((....)))))..)))-......)).))))))))......... ( -27.80) >DroYak_CAF1 3003 101 + 1 AGAAGGUUGUCGGUGUCCGUGGAGUCGCACGUGCGACAAAUCACCGGCAGCUUCAUGGCGAAAAAAUUUCU-UUGG-CCAAUCGCAAGCUUUUCUUAAUUUUA .((((.(((((((((((....))(((((....)))))....))))))))))))).((((.(((.......)-)).)-)))..(....)............... ( -34.40) >consensus AGAAGGUUGUCGGUGUCCGUGGAGUCGCACGUGCGACAAAUCACCGGCAGCUUCAUGGCGAACAAAUUUGUUUUGG_CCAAUUGAAAGCUUUU_UUAAUUUUA .((((.(((((((((((....))(((((....)))))....)))))))))))))................................................. (-19.46 = -20.68 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:02 2006