Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,488,206 – 7,488,297 |
Length | 91 |
Max. P | 0.791257 |
Location | 7,488,206 – 7,488,297 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 69.99 |
Mean single sequence MFE | -28.70 |
Consensus MFE | -9.08 |
Energy contribution | -10.44 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.24 |
Mean z-score | -1.89 |
Structure conservation index | 0.32 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.791257 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7488206 91 + 27905053 AUUCAUUGCU-AUCCACUAAGUUGACAAAUGUCGUCUAACAAUGGAG-------UGGAAUCGCGGGGAG----GUGGAGCAUGUUUUCUAUAGCAA---CGCCGGG ..((.((((.-.((((((..((((((....)))(.....))))..))-------))))...)))).))(----(((..((.(((.....)))))..---))))... ( -23.20) >DroSec_CAF1 8139 91 + 1 AUUCAUUGCU-AUCCACUAAGUUGACAAAUGUCGACUGACAAUGGAG-------UGGAAUCGCGGGGAG----GUGGAGCAUGUUUUCUAUAGCGA---CGCGGGG ..........-.((((((.(((((((....)))))))........))-------)))).(((((..(..----((((((......))))))..)..---))))).. ( -29.70) >DroEre_CAF1 8371 90 + 1 AUUCGCUGCU-CCCCUCCAAGUUGACAAAUGUCGACUAACAAUGGAG-------GGGAAUUGUGGGGAG----GUGGAGCAUGUUUUCUAUAGCG----AGCUCGG .(((.(..((-(((((((((((((((....))))))).....)))))-------))))...)..).)))----...((((.((((......))))----.)))).. ( -39.40) >DroYak_CAF1 13947 79 + 1 AUUCGCUGCU-ACCCACUAAGUUGACAAAUGUCGACUAACAAUAAAC----------AAU----------------GAGCAUGUUUUCUAUAGCGAGCGAGCUUGG .(((((((((-(.......(((((((....)))))))......((((----------(..----------------.....)))))....)))).))))))..... ( -20.60) >DroAna_CAF1 8845 104 + 1 ACCUAAUGCCGAGCCACUAAGUUGACAAAUGUCGAAUGACAAUGGCACGGCUCGGGUAUUUGCAGGGCGGUGGGUGGAACAGCUUUUUUAUGAAAA--GAGCUCGC ((((...((((.((((.....(((((....))))).......)))).))))..))))(((..(......)..))).....((((((((.....)))--)))))... ( -30.60) >consensus AUUCACUGCU_ACCCACUAAGUUGACAAAUGUCGACUAACAAUGGAG_______GGGAAUCGCGGGGAG____GUGGAGCAUGUUUUCUAUAGCGA___AGCUCGG ......((((..((((...(((((((....))))))).....))))...........................((((((......))))))))))........... ( -9.08 = -10.44 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:45:00 2006