Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,484,557 – 7,484,649 |
Length | 92 |
Max. P | 0.617712 |
Location | 7,484,557 – 7,484,649 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 80.60 |
Mean single sequence MFE | -20.32 |
Consensus MFE | -12.98 |
Energy contribution | -13.02 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.06 |
Mean z-score | -1.73 |
Structure conservation index | 0.64 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.617712 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7484557 92 + 27905053 CCUUGAUGACUCAAAAUCUGUCAUUAAGGCAAGAGUGCAGUUCAGUAGGUAACACACAUACGGAUCCC-----------AGCCCCUCAUCCGCCCAUGAACCA ((((((((((.........))))))))))..........((((((((.((.....)).)))((((...-----------........)))).....))))).. ( -20.50) >DroSec_CAF1 4497 91 + 1 CCUUGAUGACUCAAAAUCUGUCAUUAAGGCAAGAGUGCAGUUCAGUAGGUAACACACAUACGGAUCCC-----------AGCC-CUCAUCCGUCCAUGAACCA ((((((((((.........))))))))))..........(((((...((..........((((((...-----------....-...)))))))).))))).. ( -21.60) >DroEre_CAF1 4672 92 + 1 CCUUGAUGACUCAAAAUCUGUCAUUAAGGCAAAAGUGCAGUUCAGUAGGUAACACACAUUUGGAUCCC-----------AGCCCCCCAUCCGCCCAUGAACCA ((((((((((.........))))))))))..........(((((...(((.........((((...))-----------))..........)))..))))).. ( -20.11) >DroYak_CAF1 10224 103 + 1 CCUUGAUGACUCAAAAUCUGUCAUUAAGGCAAAAGUGCAGUUCAGUAGGUAACACACAUAUGGAUCCCCUCAUCCCCUCAUCCCCUCAUCCGCCCAUGAACCA ((((((((((.........))))))))))..........(((((...((............((((......))))..............)).....))))).. ( -20.17) >DroAna_CAF1 5389 74 + 1 CCUUGAUGACUCAAAAUCAGUCAUUAAGGCUAGACUGCAGUUCAGUGGGUAGCACACUUACAGAUCCCCC---------------------G--------GCA (((((((((((.......)))))))))))...(.(((....((.((((((.....)))))).)).....)---------------------)--------)). ( -19.20) >consensus CCUUGAUGACUCAAAAUCUGUCAUUAAGGCAAGAGUGCAGUUCAGUAGGUAACACACAUACGGAUCCC___________AGCCCCUCAUCCGCCCAUGAACCA ((((((((((.........)))))))))).....(((..(((........))).))).............................................. (-12.98 = -13.02 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:59 2006