Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,478,088 – 7,478,205 |
Length | 117 |
Max. P | 0.950629 |
Location | 7,478,088 – 7,478,205 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 67.79 |
Mean single sequence MFE | -33.02 |
Consensus MFE | -15.46 |
Energy contribution | -16.15 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.35 |
Mean z-score | -2.20 |
Structure conservation index | 0.47 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950629 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7478088 117 + 27905053 CAAAGAGCUACAAAAGCCCAUUAU---GCUUAUGCCCGAUGCCGAGCUCUCUGGCUUGCAUCUGGCCAAUCUCACCCAUUUCUCGCCCCACUAUCUGCUGGCCACUCACAGUUCAGCAGG ....(((......((((.......---))))..(((.(((((.(((((....)))))))))).)))....))).....................((((((..(.......)..)))))). ( -31.40) >DroSim_CAF1 3925 117 + 1 CAAACAGCUACAAAAGCCCAUCAU---GCUUAUGCCCGAUGCCGAGCUCUCUGGCUUGCAUUUGGCCAAUCUCACCCAUUUCUCGCCCCAUUAUCUGCUGGCCACUCACAGUUCAGCAGG ......((.....((((.......---))))..(((.(((((.(((((....)))))))))).)))..................))........((((((..(.......)..)))))). ( -28.60) >DroWil_CAF1 39072 117 + 1 CCAAGAGCCUCCA---CCAGUUAUUCAAUUGAAACCUAAUAAGGAGCUGGCCCAUUUACAAUUGUCCAAUUUGGUCAAUUUUAAUUGUGAUUAUCUUCUGGCCACUAAGAGUGUGGGCAA ......(((..((---((((((.(((....))).(((....)))))))((((((.(((.(((((.((.....)).))))).))).)).((......)).)))).....).)))..))).. ( -29.70) >DroYak_CAF1 3669 117 + 1 UGAGGAGCAUGGGCGGCCCAAAAC---GCUUAUGCCAGAUGCAGAGCUUUCUCGCUUGCAGCUGGCCAAUCUGACCAUUUUCUCAAAACACUAUCUGCUGGCCACUCACAGUUCAGCAGG (((((((.(((((((........)---))....(((((.((((.(((......))))))).)))))........))))))))))).........((((((..(.......)..)))))). ( -42.40) >consensus CAAAGAGCUACAAAAGCCCAUUAU___GCUUAUGCCCGAUGCCGAGCUCUCUCGCUUGCAUCUGGCCAAUCUCACCAAUUUCUCGCCCCACUAUCUGCUGGCCACUCACAGUUCAGCAGG .................................(((.(((((.((((......))))))))).)))...........................(((((((..(.......)..))))))) (-15.46 = -16.15 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:59 2006