Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,083,554 – 1,083,656 |
Length | 102 |
Max. P | 0.677445 |
Location | 1,083,554 – 1,083,656 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 78.54 |
Mean single sequence MFE | -41.73 |
Consensus MFE | -25.07 |
Energy contribution | -26.02 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.32 |
Mean z-score | -1.63 |
Structure conservation index | 0.60 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.677445 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1083554 102 + 27905053 AGCAACUGCAACAAGCUGUGGCAUCUGCCAAUCUGGAAUGCAGCGGCGCCGGCGCCAACUGCUCCACCGCCCAGAUGAUGACGCCUGCCCACCAGGCGCAGA .....((((........((.(((((((......((((..((((.((((....))))..)))))))).....)))))).).))(((((.....))))))))). ( -39.30) >DroVir_CAF1 16133 96 + 1 AGCAGCUGCAACAGGCGGUGGCUGCCACAACGCUGGAUGUGAGUGG------CGCCAAUUGUUCGACUGCCCAAAUGAUGACGCCGGCAGCUCAGGCCCAGA .((((((((....((((.((((.(((((..(((.....))).))))------)))))((..((.(......).))..))..)))).))))))...))..... ( -35.70) >DroPse_CAF1 22767 102 + 1 AACAGCUGCAGCAGGCCGUGGCAGCCACCUCCCUGGAGGGCAGUGGCGCUGGCGCCAAUUGCUCCACGGCCCAGAUGAUGACGCCGGCCCAUCAGGCCCAGA .....(((..((.((((((((.(((..((((....))))....(((((....)))))...)))))))))))((.....))..)).((((.....))))))). ( -45.60) >DroYak_CAF1 32202 101 + 1 -GCCACUGCCACAAGUGGUGGCAUCUGCUAAUCUGGAGGGCAGCGGCGCCGGCGCCAACUGCUCCACCGCCCAGAUGAUGACGCCUGCCCACCAGGCGCAGA -(((((..(.....)..))))).(((((..((((((.((((((.((((....))))..))))....))..))))))......(((((.....)))))))))) ( -49.00) >DroMoj_CAF1 18235 96 + 1 AACAGCUGCAGCAGGCGGUGGCAGCCACAACGCUGGAUGUUAGUGG------CGCCAAUUGCUCCACCGCUCAAAUGAUGACGACCGCCGCACAGGCUCAGA ...((((...((.(((((((((.(((((((((.....)))).))))------))))...........((.(((.....)))))))))))))...)))).... ( -35.20) >DroPer_CAF1 22392 102 + 1 AACAGCUGCAGCAGGCCGUGGCAGCCACCUCCCUGGAGGGCAGUGGCGCUGGCGCCAAUUGCUCCACGGCCCAGAUGAUGACGCCGGCCCAUCAGGCCCAGA .....(((..((.((((((((.(((..((((....))))....(((((....)))))...)))))))))))((.....))..)).((((.....))))))). ( -45.60) >consensus AACAGCUGCAACAGGCGGUGGCAGCCACCACCCUGGAGGGCAGUGGCGC_GGCGCCAAUUGCUCCACCGCCCAGAUGAUGACGCCGGCCCAUCAGGCCCAGA .....(((.....((((((((...(((......)))..((((((((((....)))).))))))))))))))..............((((.....))))))). (-25.07 = -26.02 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:22 2006