Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 257,282 – 257,402 |
Length | 120 |
Max. P | 0.521697 |
Location | 257,282 – 257,402 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.94 |
Mean single sequence MFE | -33.33 |
Consensus MFE | -19.73 |
Energy contribution | -20.82 |
Covariance contribution | 1.09 |
Combinations/Pair | 1.33 |
Mean z-score | -2.24 |
Structure conservation index | 0.59 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521697 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 257282 120 + 27905053 AAGUUCCUCGCUUUCCCGCUUGGCGAUCUGCUCGGCGUCCAACUUCUUAAUGCCUUCCUCAUCCAGCUUGGAAAGCAUCUUCUUACCAUGAGCCGUCUGCGAGAUUUGCUGAACCUUCUC ..((((...((......))..((((((((((.((((.............((((.((((...........)))).)))).............))))...)).))).)))))))))...... ( -27.87) >DroVir_CAF1 757 120 + 1 CAGCUCCUCACUCUCACGCAUCGCGAUCUGCUCAGCAUCGAGCUUUUUGAUGCCUUCCUCGUCCAGUUUGGAUAGCAUUUUCUUGCCGUGUGCAGUCUGCGAUAUUUGCUGCACCUUUUC ((((......(......).((((((..((((.((((((((((...)))))))).......((((.....)))).(((......)))..)).))))..))))))....))))......... ( -30.30) >DroGri_CAF1 685 120 + 1 CAGCUCCUCGCUUUCACGCAUGGCAAUUUGUUCGGCAUCGAGCUUCUUGAUGCCCUCCUCAUCCAGUUUGGAGAGCAUUUUUUUGCCGUGCGCAGUUUGCGAUAUCUGCUGCACCUUCUC ((((...((((.....((((((((((..((((((((((((((...))))))))).......(((.....)))))))).....))))))))))......)))).....))))......... ( -47.10) >DroWil_CAF1 1333 120 + 1 CAACUCUUCGUUCUCGCGCUUGGCAAUCUGCUCCGCAUCGAGUUUCUUGAUUCCCUCCUCGUCGAGCUUGGAGAGCAUCUUUUUGCCAUGGGCUGUCUGGGAAAUCUGUUGCACCUUCUC ((((......(((((((.(.((((((..(((((....((((((((..(((........)))..)))))))).))))).....)))))).).)).....)))))....))))......... ( -31.00) >DroMoj_CAF1 1336 120 + 1 CAGCUCUUCGCUUUCACGCAUAGCAAUUUGCUCAGCAUCGAGUUUCUUGAUGCCUUCCUCAUCCAAUUUGGAAAGCAUUUUCUUGCCGUGCGCAGUCUGCGAUAUUUGCUGCACCUUCUC ((((...((((.....((((..((((..((((..((((((((...))))))))........(((.....))).)))).....))))..))))......)))).....))))......... ( -36.10) >DroAna_CAF1 1333 120 + 1 CAACUCUUCGUUCUCCCGCUUGGCGAUCUGCUCGGCAUCCAGUUUCUUGAUACCCUCCUCGUCCAGCUUGGAAAGCAUUUUCUUUCCAUGGGCCGUCUGCGAGAUUUGCUGCACCUUCUC .................((..((((((((((.((((..((((((...(((........)))...))).(((((((......))))))))))))))...)).))).)))))))........ ( -27.60) >consensus CAGCUCCUCGCUCUCACGCAUGGCAAUCUGCUCGGCAUCGAGCUUCUUGAUGCCCUCCUCAUCCAGCUUGGAAAGCAUUUUCUUGCCAUGCGCAGUCUGCGAUAUUUGCUGCACCUUCUC ((((...((((......(((((((((..((((..((((((((...)))))))).((((...........)))))))).....))))))..))).....)))).....))))......... (-19.73 = -20.82 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:42 2006