Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,476,427 – 7,476,518 |
Length | 91 |
Max. P | 0.739685 |
Location | 7,476,427 – 7,476,518 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 85.71 |
Mean single sequence MFE | -29.73 |
Consensus MFE | -21.38 |
Energy contribution | -21.33 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.13 |
Mean z-score | -2.29 |
Structure conservation index | 0.72 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.739685 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7476427 91 + 27905053 AGUGUGACCAGUCGGCAAUGGUGCAGUAAUGUAAACGGAGUUGGCGGAGCAGAUCUGGCUAUUUUAUAGCUAUGUGUGCUUGUGGCUGUUU ........((((((.((((..((((....))))......)))).).(((((.((.(((((((...))))))).)).)))))..)))))... ( -28.20) >DroSim_CAF1 2264 90 + 1 AGUGUGACCAGUCGGCCAAUGUGCAGGAAUGUAAACGGAGUUGGCGGAGCAGAUCUGGCUAUAUUAGAGCUAUGUGUGCUUGUGGCUGUU- ........((((((((((((.((((....))))......)))))).(((((.((.(((((.......))))).)).))))).))))))..- ( -29.30) >DroYak_CAF1 2039 91 + 1 AGUGUGACCAGUCGGCGGUGAUGCAGGAAUGCAAACGGACUAGGCGGAACAGAUCUGGCUAUUUAAUAGCUAUGUCUGUUUCUGACUGUAU ........((((((((.((..((((....)))).)).).))....(((((((((.(((((((...))))))).))))))))).)))))... ( -31.70) >consensus AGUGUGACCAGUCGGCAAUGGUGCAGGAAUGUAAACGGAGUUGGCGGAGCAGAUCUGGCUAUUUUAUAGCUAUGUGUGCUUGUGGCUGUUU ........((((((.......((((....)))).............(((((.((.((((((.....)))))).)).))))).))))))... (-21.38 = -21.33 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:57 2006