Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,475,992 – 7,476,088 |
Length | 96 |
Max. P | 0.559808 |
Location | 7,475,992 – 7,476,088 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 98.61 |
Mean single sequence MFE | -19.97 |
Consensus MFE | -18.23 |
Energy contribution | -18.90 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.73 |
Structure conservation index | 0.91 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.559808 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7475992 96 + 27905053 CCUGUGCUGGCGCUUUAAGCCAUCAGCCACAUGCACAUUUCAUUGGAUUUAUCACGCAUAUAUAUAGUAAGGUGUUCCUUAAUAUAUAUUUAUAAA ..(((((((((.......))))....(((.(((.......)))))).........)))))((((((.(((((....))))).))))))........ ( -20.20) >DroSim_CAF1 1830 96 + 1 CCUGUGCUGGCGCUUUAAGCCAUCAGCCACAUGCACAUUUCAUUGGAUUUAUCACGCAUAUAUAUAGUAAGGUGUUCCUUAAUAUAUAUUUAUAAA ..(((((((((.......))))....(((.(((.......)))))).........)))))((((((.(((((....))))).))))))........ ( -20.20) >DroYak_CAF1 1605 94 + 1 CCUGUGCUGGCGCUUUAAGCCAUCAGCCACAUGCACAUUUCAUUGGAUUUAUCACGCAUA--UAUAGUAAGGUGUUCCUUAAUAUAUAUUUAUAAA ..(((((((((((.....)).....))))...)))))....................(((--((((.(((((....))))).)))))))....... ( -19.50) >consensus CCUGUGCUGGCGCUUUAAGCCAUCAGCCACAUGCACAUUUCAUUGGAUUUAUCACGCAUAUAUAUAGUAAGGUGUUCCUUAAUAUAUAUUUAUAAA ..(((((((((.......))))....(((.(((.......)))))).........)))))((((((.(((((....))))).))))))........ (-18.23 = -18.90 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:56 2006