Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,475,685 – 7,475,795 |
Length | 110 |
Max. P | 0.886889 |
Location | 7,475,685 – 7,475,795 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.83 |
Mean single sequence MFE | -32.27 |
Consensus MFE | -28.60 |
Energy contribution | -28.60 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.32 |
Structure conservation index | 0.89 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.886889 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7475685 110 + 27905053 CAACGACAAGUGUAUUAAGGAAGCAGACAGCGCGACGCUGCAAAAAAAGGGCGUUGGGCGGAGUCCUUAAAACGGGCUCAAAAACAAGUAGUCCCAAA----------ACCAUGCAUAUG ......((.((((((((((((..(.....((.(((((((..........))))))).)).)..)))))))...((((((........).)))))....----------....))))).)) ( -30.60) >DroSim_CAF1 1537 109 + 1 CAACGACAAGUGUAUUAAGGAAGCAGACAGCGCGACGCUGCAAA-AAAGGGCGUUGGGCGGAGUCCUUAAAACGGGCUCAAAAACAAGUAGUCCCAAA----------ACCAUGCAUAUG ......((.((((((((((((..(.....((.(((((((.....-....))))))).)).)..)))))))...((((((........).)))))....----------....))))).)) ( -30.70) >DroYak_CAF1 1291 119 + 1 CAACGACAAGUGUAUUAAGGAAGCAGACAGCGCGACGCUGCAAA-AAAGGGCGUUGGGCGGAGUCCUUAAAACGGGCUCAAAAACAUGUAGUCCCGAAUAGGAGACACACAAACCAUAUG .........((((.(((((((..(.....((.(((((((.....-....))))))).)).)..)))))))..((((((((......)).)).))))....(....))))).......... ( -35.50) >consensus CAACGACAAGUGUAUUAAGGAAGCAGACAGCGCGACGCUGCAAA_AAAGGGCGUUGGGCGGAGUCCUUAAAACGGGCUCAAAAACAAGUAGUCCCAAA__________ACCAUGCAUAUG ...........((.(((((((..(.....((.(((((((..........))))))).)).)..))))))).))((((((........).))))).......................... (-28.60 = -28.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:56 2006