Locus 2796

Sequence ID 3R_DroMel_CAF1
Location 7,475,495 – 7,475,615
Length 120
Max. P 0.531938
window4526

overview

Window 6

Location 7,475,495 – 7,475,615
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 96.67
Mean single sequence MFE -25.62
Consensus MFE -22.04
Energy contribution -22.48
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -1.95
Structure conservation index 0.86
SVM decision value -0.00
SVM RNA-class probability 0.531938
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7475495 120 + 27905053
UGCAUUUAUACAUCUCAUCCUCAUAAUGAGGCAAAUGUUUAUGCAAUAUUUGCUUUUCAUUGAUGGAAUUGUGCAAAAAAUGUUUGCAGAGUUUUUAUUUGGCCACUUUUUUAUUUGCCC
.((..........(((.((((((....((((((((((((.....))))))))))))....))).)))....((((((.....)))))))))..........))................. ( -26.15)
>DroSim_CAF1 1337 120 + 1
UGCAUUUAUACUUCUCAUCCUCAUAAUGAGCCAAAUGUUUAUGCAAUAUUUGCUUUUCAUUGAUGGAAUUGUGCAAAAGAUGUUUGCAGAGUUUUUAUUUGGCCACUUUUUUAUUUGCCC
.(((..((......((((.......))))((((((((.....(((.....)))...........((((((.((((((.....)))))).))))))))))))))........))..))).. ( -22.80)
>DroYak_CAF1 1101 120 + 1
UGCAUUUAUACUUCUCAUCCUCAUAAUGAGGCAAAUAUUUAUGCAAUAUUUGCUUUUCAUUGAUGGAAUUGUGAAAAAGGUGUUUGCAGAGUUUUUAUUUGGCCACUUUUUUAUUUGCCC
.(((..((((.(((.((((.....(((((((((((((((.....))))))))))..)))))))))))).))))(((((((((...((.((((....)))).)))))))))))...))).. ( -27.90)
>consensus
UGCAUUUAUACUUCUCAUCCUCAUAAUGAGGCAAAUGUUUAUGCAAUAUUUGCUUUUCAUUGAUGGAAUUGUGCAAAAGAUGUUUGCAGAGUUUUUAUUUGGCCACUUUUUUAUUUGCCC
.((..........(((.((((((....((((((((((((.....))))))))))))....))).)))....((((((.....)))))))))..........))................. (-22.04 = -22.48 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:55 2006