Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,475,185 – 7,475,305 |
Length | 120 |
Max. P | 0.843255 |
Location | 7,475,185 – 7,475,305 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.67 |
Mean single sequence MFE | -30.03 |
Consensus MFE | -27.70 |
Energy contribution | -28.37 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.16 |
Structure conservation index | 0.92 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.843255 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7475185 120 - 27905053 UUACUACUGUAUUUGUUUUGACUAUUUUUGGGUCGACCAUUUGCAGCUUCUUUAUGUUUGUAUUUUGAUGCUGUUGUCUGAGGUCAACUAGUUGGCUUCAAAACGAAAGCAAAAUCCGAA .......(((.((((((((((((.......))))(((.....(((((.((...(((....)))...)).))))).))).((((((((....)))))))))))))))).)))......... ( -29.20) >DroSim_CAF1 1029 120 - 1 UUACUACUGUAUUUGUUUUGCCUAUUUUUGGGUCGCCCAUUUGCAGCGUCUUUAUUUUUGUAUUUUGAUGCUGUUGUCUGAGGUCAACUAGUUGGCUUCAAAACGAAAGCAAAAUCCGAA .......(((.(((((((((((((....))))).........((((((((..(((....)))....)))))))).....((((((((....)))))))))))))))).)))......... ( -31.90) >DroYak_CAF1 791 120 - 1 UUACUACUGUAUUUGUUUUGCCUAUUUUUGGGUCGCCCAUUUGCAGCGUCUUUAUUUUUGUAUUUUGAUGCUGUUGUCUGAGGUCAACUAGUUUGCUUCAAAACGAAAGCAAAAUCAGAA ......(((..(((((((((((((....))))).(((((...((((((((..(((....)))....))))))))....)).)))......((((......)))).))))))))..))).. ( -29.00) >consensus UUACUACUGUAUUUGUUUUGCCUAUUUUUGGGUCGCCCAUUUGCAGCGUCUUUAUUUUUGUAUUUUGAUGCUGUUGUCUGAGGUCAACUAGUUGGCUUCAAAACGAAAGCAAAAUCCGAA .......(((.((((((((.........(((.....)))...((((((((..(((....)))....)))))))).....((((((((....)))))))))))))))).)))......... (-27.70 = -28.37 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:53 2006