Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,462,779 – 7,462,872 |
Length | 93 |
Max. P | 0.635462 |
Location | 7,462,779 – 7,462,872 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 78.56 |
Mean single sequence MFE | -37.25 |
Consensus MFE | -28.67 |
Energy contribution | -27.73 |
Covariance contribution | -0.94 |
Combinations/Pair | 1.21 |
Mean z-score | -1.03 |
Structure conservation index | 0.77 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.635462 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7462779 93 + 27905053 ----------------CGUUUCGCAUACCACAUUGUUCUCGCGAUGGUGGUGGUGGUGCGGCGGUAUGCUGGGCGGCACAAUGUGCGGCUGCGACUGGCUGAGCUGCUG ----------------(((.((((.(((((((((((....))))).)))))))))).)))(((((..((..(((.((((...)))).)).....)..))...))))).. ( -36.80) >DroPse_CAF1 2337 104 + 1 UGGCUUUGUGG-CA-CU---CAAAUUACCACAUUGUUCUCGCGAUGAUGGUGAUGGUGGGGCGGUAUGCUCGGCGGCACAAUGUGCGGCUGCGAUUGGCUCAACUGUUG ..(((....))-).-((---((.(((((((((((((....)))))).)))))))..))))(((((..(((((((.((((...)))).)))).....)))...))))).. ( -37.50) >DroGri_CAF1 11742 89 + 1 --------------------UGACUUACCACAUUGUUGUCGCGAUGAUGAUGAUGAUGCGGCGGUAUGCUUGGCGGCACAAUGUGCGGCUGUGAUUGGCUCAGCUGUUG --------------------........((((((((.(((((.((.((....)).))(((......)))...)))))))))))))((((((.(.....).))))))... ( -26.30) >DroYak_CAF1 2253 92 + 1 ----------------AGU-UCGCAUACCACAUUGUUCUCGCGAUGGUGGUGGUGGUGUGGCGGUAUGCUGGGCGGCACAAUGUGCGGCUGCGAUUGGCUGAGCUGCUG ----------------(((-((((...((((((..(..((((....))))..)..))))))((((.(((..(((.((((...)))).)))))))))))).))))).... ( -34.80) >DroAna_CAF1 2254 107 + 1 UGGCUA-GUGGCCA-CUGGGUCACCUACCACAUUGUUGUCGCGAUGGUGGUGGUGGUGCGGAGGUAUGCUCGGCGGCACAAUGUGUGGCUGCGACUGGCUGAGCUGCUG .(((((-((.((..-..((((.((((.((.(((..(..((((....))))..)..))).))))))..))))(((.((((...)))).))))).)))))))......... ( -45.90) >DroPer_CAF1 2344 105 + 1 UGGCUUUGGGG-CAACC---CAAAUUACCACAUUGUUCUCGCGAUGAUGGUGAUGGUGGGGCGGUAUGCUCGGCGGCACAAUGUGCGGCUGCGAUUGGCUCAACUGUUG .....(((((.-...))---)))(((((((((((((....)))))).)))))))(((.((((.(....(.((((.((((...)))).)))).)..).)))).))).... ( -42.20) >consensus ________________C___UCACUUACCACAUUGUUCUCGCGAUGAUGGUGAUGGUGCGGCGGUAUGCUCGGCGGCACAAUGUGCGGCUGCGAUUGGCUCAGCUGCUG ..........................((((((((((....)))))).))))((((((.(((((((.(((..(((.((((...)))).))))))))).)))).)))))). (-28.67 = -27.73 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:51 2006