Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,458,339 – 7,458,451 |
Length | 112 |
Max. P | 0.557659 |
Location | 7,458,339 – 7,458,451 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.21 |
Mean single sequence MFE | -53.87 |
Consensus MFE | -19.98 |
Energy contribution | -19.32 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.40 |
Mean z-score | -2.10 |
Structure conservation index | 0.37 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.557659 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7458339 112 - 27905053 GGUAUUUAAACCCUGAUUGCUGGGCGGCGAGGCGAUUCCGCCAGCAGAUGCGCCUCCAAACGAGAAGGGAGCAUUGCCGGCUGUGGUGCCG--GCGGUGCUCUUAGC------CGCACCA ((((.(((.....))).))))(((((((((((((..((.(....).))..))))))..........(((((((((((((((......))))--))))))))))).))------))).)). ( -56.90) >DroPse_CAF1 14237 118 - 1 CGUGUUAACGUUCUGGCUGCUGGGCGGAGAGGCCAUGCCGCCAGCUGCCGCUCCUCCGAACGAGAAUGGAGCGUUGCCCG--GUGGUGCCGGGGCGUUGGUCUUGGUUGUUGUUCCGCCA ....(((((((((((((.(((((((((...(((...))).))......((((((.............))))))..)))))--))...)))))))))))))...((((.(.....).)))) ( -50.32) >DroEre_CAF1 13086 112 - 1 GGUAUUUAAGCCCUGAUUACUGGGCGGCGAGGCGAUGCCGCCAGCAGAUGCGCCGCCAAAAGAGAAGGGAGCAUUGCCGGCUGUGGCGCUG--GCGGUGCUCUUAGU------GCUACCA ((((.(((((((((..((....((((((..((((....)))).((....))))))))....))..))))((((((((((((......))))--))))))))))))).------..)))). ( -56.90) >DroYak_CAF1 12613 112 - 1 GGUAUUUAAGCCCUGAUUACUGGGCGGCGAGGCGAUGCCCCCAGCAGAUGCGCCGCCAAACGAGAAGGGAGCAUUGCCGGCUGUGGCGCUG--GGUGUGCUCUUGGC------GCCACCA .........((((........))))(((..((((((((.(((.((....))..((.....))....))).)))))))).)))(((((((..--((......))..))------))))).. ( -53.20) >DroAna_CAF1 32614 115 - 1 UGUGUUCAUGCUCUGAUUGCUGGGCUGGGAAGCGAUGCCGCCAGCUGUCGCUCCGCCGAAAGAGAAUGGAGCGUUGCCGGUGGCAUUGCUG--GCUGGUGGAUUGGC---UGCUCCACCA ...(((((.((.......))))))).((..((((((((((((.((...((((((.((....).)...))))))..)).)))))))))))).--.))((((((.....---...)))))). ( -55.60) >DroPer_CAF1 14474 118 - 1 CGUGUUAACGUUCUGGCUGCUGGGCGGAGAGGCCAUGCCGCCAGCUGCCGCUCCUCCGAACGAGAAUGGAGCGUUGCCCG--GUGGUGCCGGGGCGUUGGUCUUGGUUGUUGUUCCGCCA ....(((((((((((((.(((((((((...(((...))).))......((((((.............))))))..)))))--))...)))))))))))))...((((.(.....).)))) ( -50.32) >consensus GGUAUUUAAGCCCUGAUUGCUGGGCGGCGAGGCGAUGCCGCCAGCAGACGCGCCGCCAAACGAGAAGGGAGCAUUGCCGGCUGUGGUGCCG__GCGGUGCUCUUGGC______UCCACCA .........((((........))))((...((((.(((..((.((...(((.((.............)).)))..)).))..))).)))).............(((........))))). (-19.98 = -19.32 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:50 2006