| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,456,530 – 7,456,627 |
| Length | 97 |
| Max. P | 0.999737 |
| Location | 7,456,530 – 7,456,627 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 92.46 |
| Mean single sequence MFE | -37.80 |
| Consensus MFE | -34.50 |
| Energy contribution | -34.54 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.91 |
| SVM decision value | 3.97 |
| SVM RNA-class probability | 0.999737 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7456530 97 - 27905053 UGGGAUAUCUGCUUGUGCUGCCGGGACCUUGUCGAUGGGUUUUGGUGGUGUUUGUUCCGUUUUAG---CGGGCGGCGCAGGCUGACCAAGCACAAGUUUG ..........(((((((((((((((((((.......))))))))))(((((((((.(((((....---..))))).))))))..))).)))))))))... ( -40.40) >DroSec_CAF1 10378 97 - 1 UGGGAUAUCUGCUUGUCCUGCCGGGACCUUGUCGAUGGGUUUUGGUGGUGUUUGUUCCGUUUUAG---CGGGCGGAGCAGGCUUACCAAGCACAAGUUUG ..((((.(.((((((..(..(((((((((.......)))))))))..).((((((((((((....---..))))))))))))....)))))).).)))). ( -38.40) >DroSim_CAF1 10379 97 - 1 UGGGAUAUCUGCUUGUCCUGCCGGGACCUUGUCGAUGGGUUUUGGUGGUGUUUGUUCCGUUUUAG---CGGGCGGCGCAGGCUGACCAAGCAUAAGUUUG ..((((.(.(((((((((..(((((((((.......)))))))))..).((((((.(((((....---..))))).)))))).)).)))))).).)))). ( -35.00) >DroEre_CAF1 11235 97 - 1 UGGGUUAUCUGCUUGUGCUGCCGGGACCUUGUCGGUGGGUUUUGGUGGUGUUUGUUCUGUUGAAG---CGGGCGGCGCAGGCUGACCAAGUACAAGUUUG ..(((((...((((((((((((...(((.....)))..((((..(..(........)..)..)))---).)))))))))))))))))............. ( -38.10) >DroYak_CAF1 10726 100 - 1 UGGGAUUUCUGCUUGUGCUGCCGGUACUUUGUCGGUGGGUUUUGGUGGUGUUUGUUCCGUUGAAGCAGCGGGCGGCGCAGGCUGACCAAGUACAAGUUUG (((....((.((((((((((((.(((((.....)))..(((((..(((........)))..))))).)).)))))))))))).)))))............ ( -37.10) >consensus UGGGAUAUCUGCUUGUGCUGCCGGGACCUUGUCGAUGGGUUUUGGUGGUGUUUGUUCCGUUUUAG___CGGGCGGCGCAGGCUGACCAAGCACAAGUUUG ..........(((((((((((((((((((.......))))))))))(((((((((.(((((.........))))).))))))..))).)))))))))... (-34.50 = -34.54 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:47 2006