Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,082,813 – 1,082,914 |
Length | 101 |
Max. P | 0.576159 |
Location | 1,082,813 – 1,082,914 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 76.91 |
Mean single sequence MFE | -15.14 |
Consensus MFE | -2.46 |
Energy contribution | -3.26 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.58 |
Structure conservation index | 0.16 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.576159 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1082813 101 - 27905053 UUUAUACCCUGCCUUGAGCUCUAUUACGCCCCUUGUUUAUAAAAACCGCGUAAACUGUGCAAAAAAAGGGAAAAAUUCUUAACUCAGCACUAAAAUUUCUU ......((((...((..((.(..((((((.....((((....)))).))))))...).))..))..))))............................... ( -14.10) >DroSec_CAF1 18298 100 - 1 UUUAUACCCUGCCUUGAGCUCUAUUACGCCCCUUGUUUAUAAAAAACGCGUAAACUGUGCAAAAAAAGGGAA-AAUUCUUAACUCAGCACUAAAAUUUUUA ......((((...((..((.(..((((((.....((((.....))))))))))...).))..))..))))..-............................ ( -14.10) >DroSim_CAF1 18506 100 - 1 UUUAUACCCUGCCUUGAGCUCUAUUACGCCCCUUGUUUAUAAAAAACGCGUAAACUGUGCAAAAAAAGGGAA-AAUUCUUAACUCAGCACUAAAAUUUCUA ......((((...((..((.(..((((((.....((((.....))))))))))...).))..))..))))..-............................ ( -14.10) >DroEre_CAF1 20241 86 - 1 UUAAUCCCCUGA-----GCUCGAUCAUCCCAUUUUUUAAUAAAAAA-------ACUGUU-A-AAAAAUGGAA-AAUUCUUAGCUCAGCACUAAAAUUUCUA ........((((-----(((.((.....(((((((((((((.....-------..))))-)-))))))))..-...))..))))))).............. ( -22.00) >DroYak_CAF1 31507 89 - 1 UUAAUGCUUUGU-----CUUGGACUA---CAAUUGAUAAAAAAGAAAGCGC--ACUGUGCA-GAAAAGGGAG-AAUUCUUAGCUCAGCAAUAAAAUUUAUA (((.((((((((-----((((.....---)))..))))))......(((((--.....)).-.......(((-....))).)))..))).)))........ ( -11.40) >consensus UUUAUACCCUGCCUUGAGCUCUAUUACGCCCCUUGUUUAUAAAAAACGCGUAAACUGUGCAAAAAAAGGGAA_AAUUCUUAACUCAGCACUAAAAUUUCUA ........................................................((((......(((((....)))))......))))........... ( -2.46 = -3.26 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:21 2006