Locus 2789

Sequence ID 3R_DroMel_CAF1
Location 7,455,386 – 7,455,502
Length 116
Max. P 0.511692
window4518

overview

Window 8

Location 7,455,386 – 7,455,502
Length 116
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.22
Mean single sequence MFE -34.33
Consensus MFE -21.04
Energy contribution -22.10
Covariance contribution 1.06
Combinations/Pair 1.23
Mean z-score -1.81
Structure conservation index 0.61
SVM decision value -0.04
SVM RNA-class probability 0.511692
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7455386 116 - 27905053
AAAGCAAGCCAAGUGUAAGCCGGUGAUCUU----CUCAUAGGAUGAUUGAUGGCUUAUACUUACUUCAGUGUUGAUGCGCUUUCGGGAGAUCUCCUUAAGCUCCUCCAACACGCUUCUAG
..((.((((.((((((((((((..((((.(----((....))).))))..))))))))))))......((((((..(.((((..((((....)))).))))..)..)))))))))))).. ( -41.40)
>DroSec_CAF1 9246 116 - 1
AAAGCAAGCCAAGUGUAAGCCGGUGUCCUU----GUCACAGGAUGAAUGAUGGCUUAUACUUACUCCAGUGUUGAUGCGCUUUCGGGAGAUCUCCUUAAGCUCCUCCAGCACGCUUCUAG
..((.((((.((((((((((((.((((((.----.....)))))).....))))))))))))......((((((..(.((((..((((....)))).))))..)..)))))))))))).. ( -40.80)
>DroSim_CAF1 9247 116 - 1
AAAGCAAGCCAAGUGUAAGCCGGUGUCCUU----GUCACAGAAUGAAUGAUGGCUUAUACUUACUCCAGUGUUGAUGCGCUUUCGGGAGAUCUCCUUAAGCUCCUCCAGCACGCUUCUAG
..((.((((.((((((((((((...((.((----.......)).))....))))))))))))......((((((..(.((((..((((....)))).))))..)..)))))))))))).. ( -35.50)
>DroEre_CAF1 10085 116 - 1
AAAACAAGUCAAGUCUAAGCCGGUGUUCCU----UUCCCAGGAUGCCUGAUGGCUUAUACUUACUCCAGUGUUAAUGCGCUUCCGGGAGAUCUCCUUUAGCUCCUCCAGCACGCUUCUAG
......(((.((((.(((((((((((.(((----.....))))))))....)))))).)))))))...(((((...(.(((...((((....))))..))).)....)))))........ ( -29.80)
>DroYak_CAF1 9555 116 - 1
AAAACAAGCGAAGCCUAAGCCGGUGUCCUU----UUCACAGGAUGCUUGAUGGCUUAUACUUACUCCCGUAUUGAUGCGCUUCCGGGAGAUCUCCUUAAGCUCCUCCAGCACGCUUCUUG
.....((((((((..((((((((((((((.----.....))))))))....))))))..))).((((((....((......))))))))..........(((.....))).))))).... ( -33.90)
>DroAna_CAF1 29574 116 - 1
AAAACAAGCGAAGCCUAAGUUCAUGGCUCUCAACUCCACAAACG----GCAGCCUUAAACUUACGCCACUGUUGAUUCGUUUUCGCGAUAUUUCUUUCAGCUCGUCCAGCACGCUUCGGG
........((((((.((((((...((((.((............)----).))))...)))))).((.((.(((((.((((....))))........)))))..))...))..)))))).. ( -24.60)
>consensus
AAAACAAGCCAAGUCUAAGCCGGUGUCCUU____UUCACAGGAUGAAUGAUGGCUUAUACUUACUCCAGUGUUGAUGCGCUUUCGGGAGAUCUCCUUAAGCUCCUCCAGCACGCUUCUAG
.....((((.((((.(((((((.((((((..........)))))).....))))))).))))......((((((..(.(((...((((....))))..)))..)..)))))))))).... (-21.04 = -22.10 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:46 2006