Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,453,059 – 7,453,222 |
Length | 163 |
Max. P | 0.946742 |
Location | 7,453,059 – 7,453,164 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 83.43 |
Mean single sequence MFE | -34.26 |
Consensus MFE | -19.26 |
Energy contribution | -21.54 |
Covariance contribution | 2.28 |
Combinations/Pair | 1.16 |
Mean z-score | -2.34 |
Structure conservation index | 0.56 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.705359 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7453059 105 + 27905053 CGCCGGAUUGUCUGAACGAUCCAUUCGGGGAAGUCGAUGAAUACAUUGUGGAAUCCCCAGAAGAAGUUUUGGAUCAUG---AUAGUGAUGCUCAUCAUGAUCUGGAUG ....(((((((....))))))).((((((((...(((((....))))).....))))).))).....((..(((((((---((((.....)).)))))))))..)).. ( -37.20) >DroSec_CAF1 6893 102 + 1 CGCCGGAUUGUCUGGACGAUCCUUUCGGGGAAGUCGAUGAAUACAUUGUGGAAUCCCCAGAAGAAGUUUUGGAUCGUGAUGAUAGUGAUGCGCAU------CUGGAUG ..((((((((((...((((((((((((((((...(((((....))))).....))))).)))).......)))))))...))))(((...)))))------))))... ( -31.91) >DroSim_CAF1 6906 105 + 1 CGCCGGAUUGUCUGAACGAUCCUUUCGGGGAAGUCGAUGAAUACAUUGUGGAAUCCCCAGAAGAAAUUUUGGAUCGUG---AUAGUGAUGCGCAUCAUGAACUGGAUG ..((((..((((...(((((((....(((((...(((((....))))).....)))))((((....))))))))))))---)))(((((....)))))...))))... ( -33.40) >DroEre_CAF1 7164 102 + 1 CGGCGGAUGAGCUGAACGAUCCAUUUGGGGAAGUCGAUGAAUACUUUGAGGAAUCCCCAG---AGUAUGGGGAUAGUG---AUAUUAAUGCACAUGAAGAUCUGGAUG ((((......))))....(((((((((((((..((((........))))....)))))))---)((((...((((...---.)))).))))...........))))). ( -28.30) >DroYak_CAF1 7132 105 + 1 CGGCGGAUGAGCUGAACGAUCCAUUCGGGGAAGUCGAUGAAUACUUCGAAGAAUCCCCAGAUGAGGAUGCGGAUCGUG---AUAUUGAUGCGCAUCAAGAUCUGGAUG ((((......))))....((((....(((((..((((........))))....)))))((((...((((((.((((..---....)))).))))))...)))))))). ( -40.50) >consensus CGCCGGAUUGUCUGAACGAUCCAUUCGGGGAAGUCGAUGAAUACAUUGUGGAAUCCCCAGAAGAAGUUUUGGAUCGUG___AUAGUGAUGCGCAUCAAGAUCUGGAUG ..((((((.......((((((((((((((((...(((((....))))).....)))))....))))....))))))).......(((((....))))).))))))... (-19.26 = -21.54 + 2.28)
Location | 7,453,127 – 7,453,222 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 79.21 |
Mean single sequence MFE | -26.76 |
Consensus MFE | -16.70 |
Energy contribution | -17.30 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.18 |
Mean z-score | -1.67 |
Structure conservation index | 0.62 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.575439 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7453127 95 + 27905053 UUGGAUCAUG---AUAGUGAUGCUCAUCAUGAUCUGGAUGAGGAUAAUUAUAUUGAUUCUGUUGAAGAUGUUGAUGCGCUUCAAGAUAUGGCUGA------------AGU ..((((((..---(((((.((.((((((........)))))).)).)))))..))))))(.((((((.(((....))))))))).).........------------... ( -24.70) >DroSec_CAF1 6961 104 + 1 UUGGAUCGUGAUGAUAGUGAUGCGCAU------CUGGAUGAGGAUCAUUAUAUUGAUUCUGUUGAAGAUGUUGAUGCACUUCAAGAUAUGGCAGAAGGUCAGCUAAAAGU ...((((......((((((((.(.(((------....))).).)))))))).....(((((((((((.(((....)))))))).......)))))))))).......... ( -25.51) >DroSim_CAF1 6974 107 + 1 UUGGAUCGUG---AUAGUGAUGCGCAUCAUGAACUGGAUGAGGAUCAUUAUAUUGAUUCUGUCGAAGAUGUUGAUGCACUUCAAGAUAUGGCAGAAGGUCAGCUAAAAGU ...((((...---((((((((.(.((((........)))).).)))))))).....((((((((...((.((((......)))).)).)))))))))))).......... ( -30.50) >DroEre_CAF1 7229 107 + 1 GGGGAUAGUG---AUAUUAAUGCACAUGAAGAUCUGGAUGAGGAUCAAUAUAUUGAAUCUGUUGAAGAUGUCGAUGUGCUGCAAGAUACGAAUGCAGUUCAGUUGGAAGC ...((((...---.))))..(.((..(((((((((......)))))..((((((((((((.....)))).))))))))(((((.........)))))))))..)).)... ( -21.80) >DroYak_CAF1 7200 107 + 1 GCGGAUCGUG---AUAUUGAUGCGCAUCAAGAUCUGGAUGAGGACCAAUAUAUUGAUUCUAUUGAAGAUGCUGAUGCGCUUCAAGAUAUGGAUGCAGUUCAGCUGGAAGU (((..(((((---...((((.((((((((..((((.....((((.(((....))).)))).....))))..)))))))).))))..))))).)))............... ( -31.30) >consensus UUGGAUCGUG___AUAGUGAUGCGCAUCAAGAUCUGGAUGAGGAUCAUUAUAUUGAUUCUGUUGAAGAUGUUGAUGCGCUUCAAGAUAUGGCUGAAGGUCAGCUAAAAGU ..((((((.....((((((((.(.((((........)))).).))))))))..))))))..((((((.(((....))))))))).......................... (-16.70 = -17.30 + 0.60)
Location | 7,453,127 – 7,453,222 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 79.21 |
Mean single sequence MFE | -17.68 |
Consensus MFE | -12.48 |
Energy contribution | -13.56 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.24 |
Mean z-score | -2.10 |
Structure conservation index | 0.71 |
SVM decision value | 1.37 |
SVM RNA-class probability | 0.946742 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7453127 95 - 27905053 ACU------------UCAGCCAUAUCUUGAAGCGCAUCAACAUCUUCAACAGAAUCAAUAUAAUUAUCCUCAUCCAGAUCAUGAUGAGCAUCACUAU---CAUGAUCCAA .((------------((((.......))))))............................................((((((((((........)))---)))))))... ( -14.90) >DroSec_CAF1 6961 104 - 1 ACUUUUAGCUGACCUUCUGCCAUAUCUUGAAGUGCAUCAACAUCUUCAACAGAAUCAAUAUAAUGAUCCUCAUCCAG------AUGCGCAUCACUAUCAUCACGAUCCAA .......((.(.....).)).......(((.(((((((....(((.....)))((((......)))).........)------)))))).)))................. ( -14.30) >DroSim_CAF1 6974 107 - 1 ACUUUUAGCUGACCUUCUGCCAUAUCUUGAAGUGCAUCAACAUCUUCGACAGAAUCAAUAUAAUGAUCCUCAUCCAGUUCAUGAUGCGCAUCACUAU---CACGAUCCAA .......((.(.....).)).......(((.((((((((....((.....((.((((......)))).)).....))....)))))))).)))....---.......... ( -16.50) >DroEre_CAF1 7229 107 - 1 GCUUCCAACUGAACUGCAUUCGUAUCUUGCAGCACAUCGACAUCUUCAACAGAUUCAAUAUAUUGAUCCUCAUCCAGAUCUUCAUGUGCAUUAAUAU---CACUAUCCCC .........(((..((((.........))))((((((.((.((((.....((..((((....))))..)).....)))).)).)))))).......)---))........ ( -17.20) >DroYak_CAF1 7200 107 - 1 ACUUCCAGCUGAACUGCAUCCAUAUCUUGAAGCGCAUCAGCAUCUUCAAUAGAAUCAAUAUAUUGGUCCUCAUCCAGAUCUUGAUGCGCAUCAAUAU---CACGAUCCGC .......((......)).........((((.(((((((((.((((.....((.(((((....))))).)).....)))).))))))))).))))...---.......... ( -25.50) >consensus ACUUCCAGCUGAACUUCAGCCAUAUCUUGAAGCGCAUCAACAUCUUCAACAGAAUCAAUAUAAUGAUCCUCAUCCAGAUCAUGAUGCGCAUCACUAU___CACGAUCCAA ...........................(((.((((((((..((((.....((.((((......)))).)).....))))..)))))))).)))................. (-12.48 = -13.56 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:45 2006