Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,452,854 – 7,452,951 |
Length | 97 |
Max. P | 0.750695 |
Location | 7,452,854 – 7,452,951 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 78.48 |
Mean single sequence MFE | -29.45 |
Consensus MFE | -20.42 |
Energy contribution | -20.20 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.30 |
Mean z-score | -1.37 |
Structure conservation index | 0.69 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.750695 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7452854 97 - 27905053 CUUGGUUCAAGUCAAGCGUGCAGCAGGCGCAUAUGCUGCUGGGCAGCUCUGGAUCGUUGUGGAGCUGCAAUCACAGAAAAUGCUGCACAAAUCAAAU--- (((((......))))).(((((((((((((....)).)))..(((((((((.(....).)))))))))............)))))))).........--- ( -36.50) >DroVir_CAF1 25618 94 - 1 CUUGUUUCAGGUCAAGAAGACAGCAAGCGCAUAUGUGGGAUGGCAGCUCGGGACUGCUUACCAGCUGUAAGCAAUGCAA--AUAUUACAAUU-GUUU--- ((((........))))...(((((...(((....)))((..((((((....).)))))..)).)))))(((((((....--........)))-))))--- ( -22.10) >DroSec_CAF1 6688 97 - 1 CUUGGUUCAAGUCGAGCGUGCAGCAGGCGCAUAUGCUGCUCGGCAGCUCUGGAUCGUUGUGGAGCUGCAAUCACAGUUAAUGUUGCACAAAUCAAAU--- .(((((((.....))))(((((((((((((....)).)))..(((((((((.(....).)))))))))............))))))))....)))..--- ( -34.80) >DroSim_CAF1 6701 97 - 1 CUUGGUUCAAGUCGAGCGUGCAGCAGGCGCAUAUGCUGCUCGGCAGCUCUGGAUCGUUGUGGAGCUGCAAUCACAGUAAAUGUUUCACAAAUCAAAU--- .((((((...((.((((((((((((........))))))...(((((((((.(....).)))))))))...........)))))).)).))))))..--- ( -32.10) >DroEre_CAF1 6920 100 - 1 CUUGGUUCAAGUCCAGCGUACAGCAGGCGCAUAUGCAGCUGGGCAGCUUUGGAUCAUUGUGGAGCUGCAAUCACAGAAUAUCUUACACAAUACACACAGA ...(((((((((((((((((..((....))...))).)))))))....)))))))((((((((.(((......)))....))...))))))......... ( -25.80) >DroYak_CAF1 6888 100 - 1 CUUGGUUCAAGUCCAGCGUACAGCAGGCGCAUAUGCAGCUGGGCAGGUCUGGAUCAUUGUGGAGCUGCAAUCACAGAAUAAUUUUCACAAUAUACAUUGA ...((((((.((((((((((..((....))...))).))))))).....))))))((((((((((((......)))......)))))))))......... ( -25.40) >consensus CUUGGUUCAAGUCAAGCGUACAGCAGGCGCAUAUGCUGCUGGGCAGCUCUGGAUCGUUGUGGAGCUGCAAUCACAGAAAAUGUUUCACAAAUCAAAU___ ..(((((.....(((((.....(((........))).)))))(((((((((.(....).))))))))))))))........................... (-20.42 = -20.20 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:42 2006