Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,452,649 – 7,452,753 |
Length | 104 |
Max. P | 0.612759 |
Location | 7,452,649 – 7,452,753 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 75.90 |
Mean single sequence MFE | -28.05 |
Consensus MFE | -12.32 |
Energy contribution | -12.60 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.35 |
Mean z-score | -1.99 |
Structure conservation index | 0.44 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.612759 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7452649 104 + 27905053 AUUGGUUGUUUAUAUUCGAAUUAAACUGAAGUUGGGCU--AAACUUCGGUUGAUUUUCAACU---AACAUUAUGGCGCUCCAGUGCCGGACCUGCGGCAGCAUCAUCUA ...((((..........(((...((((((((((.....--.))))))))))....)))....---.......((((((....))))))))))(((....)))....... ( -29.10) >DroPse_CAF1 7969 108 + 1 GAUUUUAGUUUGU-UUUGAAUAAAAAUGUAUUUUAUUUUUCAUAUUUUACGUGCUAGAAACGAGAUUUAAAAUGACGCUGCAAUGCCGAGCCUGCGGGGGCGUCAUCUA ..(((((((.(((-...(((((((((((.....))))))...))))).))).)))))))............((((((((.(...((.......)).).))))))))... ( -22.50) >DroSec_CAF1 6475 104 + 1 AUUGGUUGUUUAUAUUCGAAUUAAACUGAAGUUGGUCU--AAACUUCGGUUUGUUUCCAACA---AAUAUUAUGGCGCUCCAGUGCCGGACCUGCGGCAGCAUCAUCUA ...((((..........(((.((((((((((((.....--.)))))))))))).))).....---.......((((((....))))))))))(((....)))....... ( -30.70) >DroSim_CAF1 6488 104 + 1 AUUGGUUGUUUAUAUUCGAAUUAAACUGAAGUUGGUCU--AAACUUCGGUUUGUUUCCAACA---AACAUUAUGGCGCUCCAGUGCCGGACCUGCGGCAGCAUCAUCUA ...((((((((......(((.((((((((((((.....--.)))))))))))).)))....)---)))....((((((....))))))))))(((....)))....... ( -31.10) >DroEre_CAF1 6709 104 + 1 AUUGAUUGUUUAUUUUCGAAUUAAGCGGAAGUUUGGGU--AAACUUCGGUUAAAUUUCCACA---AUCAUAAUGCCACUUCAAUGCCGCACCUGCGGAAGCAUCAUCUA ..(((((((........(((((.(((.(((((((....--))))))).))).)))))..)))---))))..((((..........((((....))))..))))...... ( -22.40) >DroYak_CAF1 6677 104 + 1 AUUGAUUGUUUAUAUUCGAACUUAGCUAAAGUUGGGGU--AAGCUUUGGUUUAUUUUGAACU---AACAUAAUGACGCUUCAAUGCCGCACCUGCGGAAGCGUCAUCUA ......((((....((((((...((((((((((.....--.))))))))))...))))))..---))))..(((((((((.....((((....)))))))))))))... ( -32.50) >consensus AUUGGUUGUUUAUAUUCGAAUUAAACUGAAGUUGGGCU__AAACUUCGGUUUAUUUUCAACA___AACAUAAUGGCGCUCCAAUGCCGGACCUGCGGCAGCAUCAUCUA .......................((((((((((........))))))))))....................((((.(((......(((......))).))).))))... (-12.32 = -12.60 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:42 2006