Locus 2784

Sequence ID 3R_DroMel_CAF1
Location 7,443,839 – 7,443,939
Length 100
Max. P 0.954015
window4511

overview

Window 1

Location 7,443,839 – 7,443,939
Length 100
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 91.83
Mean single sequence MFE -31.44
Consensus MFE -24.46
Energy contribution -25.70
Covariance contribution 1.24
Combinations/Pair 1.04
Mean z-score -2.35
Structure conservation index 0.78
SVM decision value 1.44
SVM RNA-class probability 0.954015
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7443839 100 - 27905053
UCACUCCCUGCC-ACAGUGGUGGCCAGUGAUUAAGGGCACACUCCUGCCCACCGGACACCGAAAUUGUUGUUUUCCCGGUAAA----AAAGCCGUGUCCACAAUA
(((((....(((-((....))))).)))))....(((((......)))))...((((((.((((.......))))..(((...----...)))))))))...... ( -34.60)
>DroSec_CAF1 26521 102 - 1
UCGCUCCCUGCC-ACAGUGGUGGCCAGUGAUUAAGGGCACACUCCUGCCCACCGGACACCGAAAUUGUUGUUUUCCCGGUAAAA--AAAAGCCGUGUCCACAAUA
(((((....(((-((....))))).)))))....(((((......)))))...((((((.((((.......))))..(((....--....)))))))))...... ( -34.00)
>DroSim_CAF1 25164 100 - 1
UCGCUCCCUGCC-ACAGUGGUGGCCAGUGAUUAAGGGCACACUCCUGCCCACCGGACACCGAAAUUGUUGUUUUCCCGGUAAA----AAAGCCGUGUCCACAAUA
(((((....(((-((....))))).)))))....(((((......)))))...((((((.((((.......))))..(((...----...)))))))))...... ( -34.20)
>DroEre_CAF1 26641 94 - 1
UCGCUCCAUGCC-ACAGUGGUGGCCAGUGAUUAAGGGCACACUCCUGCCCACCGGACACCCAAAUUG---UUUUCCCGU-------AGAACCCGUGUCCACAAUA
(((((....(((-((....))))).)))))....(((((......)))))...((((((.......(---((((.....-------)))))..))))))...... ( -28.80)
>DroYak_CAF1 27328 105 - 1
UCGCUCCCUGACAACAGUGGUGGCCAGUGAUUAAGGGCACACUCCUGCCCACCGGACACCCAAAUUGUUGUUUUCCCGGUAAAAAAAAAACCCGUGUCCACAAUA
..((((((((....))).)).)))..........(((((......)))))...((((((.(((....))).......(((.........))).))))))...... ( -25.60)
>consensus
UCGCUCCCUGCC_ACAGUGGUGGCCAGUGAUUAAGGGCACACUCCUGCCCACCGGACACCGAAAUUGUUGUUUUCCCGGUAAA___AAAAGCCGUGUCCACAAUA
(((((..(((((......)))))..)))))....(((((......)))))...((((((.((((.......))))..(((..........)))))))))...... (-24.46 = -25.70 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:40 2006