Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,443,656 – 7,443,762 |
Length | 106 |
Max. P | 0.844985 |
Location | 7,443,656 – 7,443,762 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 92.26 |
Mean single sequence MFE | -34.01 |
Consensus MFE | -28.81 |
Energy contribution | -29.12 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.03 |
Mean z-score | -1.88 |
Structure conservation index | 0.85 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.844985 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7443656 106 + 27905053 ACAUGCAAUGUGUCCCGAGUUCAAUGCACUUGCCACUCAGC--------CUCAAACUCCGCUGCAGUGGCUCUUGGCCAGAUACACA-GGCAUA---GCAUACUAGAAGAUCGCGUGA .(((((..(((((((((((............((((((((((--------..........)))).)))))).)))))...))))))..-....((---(....))).......))))). ( -30.42) >DroSec_CAF1 26338 106 + 1 ACAUGCAAUGUGUCCCGAGUUCAAUGCACUUGCCACUCAGC--------CUCAAACUCUGCUGCAGUGGCUCUUGGCCAGAUACACA-GGCAUA---GCAUACUAGCAGAUCGCGUGA .(((((.((.(((....(((...((((....((((((((((--------..........)))).)))))).....(((.........-)))...---))))))).))).)).))))). ( -33.60) >DroSim_CAF1 24981 106 + 1 ACAUGCAAUGUGUCCCGAGUUCAAUGCACUUGCCACUCAGC--------CUCAAACUCUGCUGCAGUGGCUCUUGGCCAGAUACACA-GGCAUA---GCAUACUAGCAGAUCGCGUGA .(((((.((.(((....(((...((((....((((((((((--------..........)))).)))))).....(((.........-)))...---))))))).))).)).))))). ( -33.60) >DroYak_CAF1 27133 118 + 1 ACAUGCAAUGUGUCCCGGGUUCAAUGCACUUGCCACUCAGCCACUCAGCCUCAAACUUCGCUGCAGUGGCUCUUGGCCAGAUACACAAGGCAUACAGGAAUACUAGCAGAUCGCGUGA .(((((.((.(((.....((((.((((.((.((((...(((((((((((..........)))).)))))))..)))).))...(....)))))....))))....))).)).))))). ( -38.40) >consensus ACAUGCAAUGUGUCCCGAGUUCAAUGCACUUGCCACUCAGC________CUCAAACUCCGCUGCAGUGGCUCUUGGCCAGAUACACA_GGCAUA___GCAUACUAGCAGAUCGCGUGA .(((((.((.(((....(((...((((....((((((((((..................)))).)))))).....(((..........)))......))))))).))).)).))))). (-28.81 = -29.12 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:38 2006