Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,440,175 – 7,440,276 |
Length | 101 |
Max. P | 0.533132 |
Location | 7,440,175 – 7,440,276 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 93.26 |
Mean single sequence MFE | -30.70 |
Consensus MFE | -23.36 |
Energy contribution | -23.12 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.09 |
Mean z-score | -1.67 |
Structure conservation index | 0.76 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.533132 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7440175 101 - 27905053 UAUUAUUUAAAUGCUGAGAUAUCGCGUGUGUAAUGC-----ACGUUCGUUUCUGGGGC--UCGCUUUUGUGCCAGAUCAUUGGCACAGCUGCUGUUUAGAUGGCGAUA ..((((((((((.((.(((.((.((((((.....))-----))))..)).))).))..--..((..(((((((((....)))))))))..)).))))))))))..... ( -31.50) >DroSec_CAF1 22888 101 - 1 UAUUAUUUAAAUGCUGAGAUAUCGCGUGUGUAGUGC-----ACGUUCGUUUCUGGGGC--UCGCUUUUGUGCAAGAUCAUUGGCACAGCUGCUGUUUAGAUGGCGAUA ..((((((((((.((.(((.((.((((((.....))-----))))..)).))).))..--..((..((((((..........))))))..)).))))))))))..... ( -26.20) >DroSim_CAF1 21572 101 - 1 UAUUAUUUAAAUGCUGAGAUAUCGCGUGUGUAGUGC-----ACGUUCGUUUCUGGGGC--UCGCUUUUGUGCCAGAUCAUUGGCACAGCUGCUGUUUAGAUGGCGAUA ..((((((((((.((.(((.((.((((((.....))-----))))..)).))).))..--..((..(((((((((....)))))))))..)).))))))))))..... ( -31.50) >DroEre_CAF1 23034 101 - 1 UAUUAUUUAAAUGAUGAGAUAUAGCGUGUGUAGUGC-----GCGUUCGUUUCUGGAGC--UUGCUUUUGUGCCAGAUCAUUGGCACAGCUGCUGUUUAGAUAGCGAUA ..((((((((((...(((((..(((((((.....))-----))))).)))))...(((--..(((...(((((((....)))))))))).)))))))))))))..... ( -30.30) >DroYak_CAF1 23662 108 - 1 UAUUAUUUAAAUGCUGAGAUAUAGUGUGUGUAGUGCGCUGCGCGUUCGUUUCUGGGGCUCUCGCUUUUGUGCCAGAUCAUUGGCACAGCUGCUGUUUAGAUAGCGAUA ..((((((((((.((.(((....(..(((((((....)))))))..)...))).))......((..(((((((((....)))))))))..)).))))))))))..... ( -34.00) >consensus UAUUAUUUAAAUGCUGAGAUAUCGCGUGUGUAGUGC_____ACGUUCGUUUCUGGGGC__UCGCUUUUGUGCCAGAUCAUUGGCACAGCUGCUGUUUAGAUGGCGAUA ..((((((((((.((.(((....(((..(((..........)))..))).))).))......((..(((((((((....)))))))))..)).))))))))))..... (-23.36 = -23.12 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:36 2006