| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,437,904 – 7,437,998 |
| Length | 94 |
| Max. P | 0.889576 |
| Location | 7,437,904 – 7,437,998 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 90.56 |
| Mean single sequence MFE | -14.08 |
| Consensus MFE | -13.53 |
| Energy contribution | -13.53 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.889576 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7437904 94 - 27905053 GAGCUGCAGAACGAAAGAUGCAGUGGAAAAUGGCAGG--AAAAAAGGAGUAGAGAAAGAACGGGAAUUCCUAAUUUAAUAGUAAUCAUAAUGAAUG ((((((((...(....).)))))).............--.....((((((...............)))))).............)).......... ( -13.96) >DroSec_CAF1 20685 96 - 1 GAGCUGCAAAACGAAAGAUGCAGUGGAAAAUGGCGGGAGAAAAAAGGAGUAGAGAAAGAACGGGAAUUCCUAAUUUAAUAGUAAUCAUAAUGAAUG ((((((((...(....).))))))........((.....(((..((((((...............))))))..)))....))..)).......... ( -13.06) >DroEre_CAF1 20785 85 - 1 GAGCUGCAGAACGAAAGAUGCAGUGGAAAAU-----------AAAGGAGUUGAGAAAGAACGGGAAUUCCUAAUUUAAUAGUAAUCAUAAUGAAUG ((((((((...(....).)))))).......-----------..(((((((.............))))))).............)).......... ( -15.22) >consensus GAGCUGCAGAACGAAAGAUGCAGUGGAAAAUGGC_GG__AAAAAAGGAGUAGAGAAAGAACGGGAAUUCCUAAUUUAAUAGUAAUCAUAAUGAAUG ((((((((...(....).))))))....................((((((...............)))))).............)).......... (-13.53 = -13.53 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:35 2006