Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,078,965 – 1,079,070 |
Length | 105 |
Max. P | 0.644374 |
Location | 1,078,965 – 1,079,070 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 93.25 |
Mean single sequence MFE | -31.85 |
Consensus MFE | -30.15 |
Energy contribution | -29.18 |
Covariance contribution | -0.97 |
Combinations/Pair | 1.26 |
Mean z-score | -0.94 |
Structure conservation index | 0.95 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.644374 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1078965 105 + 27905053 CAGCCCUUGCGGUUGCGCAGACGAAGUGCAUCCGAAACCAGGACAGCAAUG--CGGUGCGUGACUUGGCGAAUGGUGUGCCCAAAACGGAAGUGCACAAAAACAAAC ..(((.(((((((..((((..((...(((.(((.......)))..)))...--)).))))..)))..))))..)))((((.....((....)))))).......... ( -33.80) >DroSec_CAF1 14474 105 + 1 UAGCCCUUGCGACUGCGCAGACGAAGUGCAUCCGAAACCAGGACAGCAAUG--CGGUGCGUGACCUGGCGAAUGGUGUGCCCAAAACGGAAGUGCACAAAAACAAAC ......(((((....))))).....(((((((((...(((((.(((((...--...))).)).)))))....(((.....)))...))))..))))).......... ( -30.70) >DroSim_CAF1 14677 105 + 1 CAGCCCUUGCGACUGCGCAGACGAAGUGCAUCCGAAACCAGGACAGCAAUG--CGGUGCGUGACCUGGCGAAUGGUGUGCCCAAAACGGAAGUGCACAAAAACAAAC ......(((((....))))).....(((((((((...(((((.(((((...--...))).)).)))))....(((.....)))...))))..))))).......... ( -30.70) >DroEre_CAF1 16384 105 + 1 CAGCCCUUGCGACUGCGCAGACGAAGUGCAUCUGAAAUCAGGACAGCAAUG--CGGUGCGUGACCUGGCGAAUGGUGUGCCCAAAACGGAAGUGCACAAAAACAAAC ..(((.(..((((((((((.......))).((((....))))........)--)))).))..)...)))...((.(((((.....((....)))))))....))... ( -28.90) >DroYak_CAF1 27210 105 + 1 CAGCCCUUGCGACUGCGCAGACGAAGUGCAUUCGAAACCAGGACAGCAAUG--UGGUGCGUGACCUGGCGAAUGGUGUGCCCAAAACGGAAGUGCACAAAAACAAAC ..(((....(((.(((((.......))))).)))...(((((.(((((...--...))).)).))))).....)))((((.....((....)))))).......... ( -30.30) >DroAna_CAF1 14713 107 + 1 AAGUUUCUGCGGCUGCGCGGAUGAAGUGCAUCCGAAACCAGGACAGCGCCGCACAGUGCGUGACCUGGCGAAUGGUGUGCCCAAAACGGAAGUGCACAAAAACAAAC ..(((((((((....))))))....(((((((((...(((((.((((((......)))).)).)))))....(((.....)))...))))..)))))...))).... ( -36.70) >consensus CAGCCCUUGCGACUGCGCAGACGAAGUGCAUCCGAAACCAGGACAGCAAUG__CGGUGCGUGACCUGGCGAAUGGUGUGCCCAAAACGGAAGUGCACAAAAACAAAC ......(((((....))))).....(((((((((...(((((.(((((........))).)).)))))....(((.....)))...))))..))))).......... (-30.15 = -29.18 + -0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:20 2006