Locus 2778

Sequence ID 3R_DroMel_CAF1
Location 7,437,423 – 7,437,515
Length 92
Max. P 0.942372
window4504

overview

Window 4

Location 7,437,423 – 7,437,515
Length 92
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 95.34
Mean single sequence MFE -27.02
Consensus MFE -25.56
Energy contribution -25.96
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.40
Structure conservation index 0.95
SVM decision value 1.33
SVM RNA-class probability 0.942372
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7437423 92 - 27905053
GAAAUGGGCAACGCAUUCAGCCAGACUUCUUCGGCUUGCGGAUUAUCUAAGAUCUGCUCUAAGCUGGAAAAGAAUUUCCAUCGCAACGCCGA------
(((...(((..........)))....))).(((((..(((((((......))))))).....((((((((....))))))..))...)))))------ ( -26.30)
>DroSec_CAF1 20215 92 - 1
GAAAUGGGCAACGCAUUCAGCUAGACUUCUUCGGCUUGCGGAUUAUCUAAGAUCUGCUCUAAGCUGGAAAAGAAUUUCCGUCGCGACGCCGA------
......(((..(((..((.....))(((.(((((((((((((((......)))))))...)))))))).)))..........)))..)))..------ ( -28.20)
>DroSim_CAF1 18827 92 - 1
GAAAUGGGCAACGCAUUCAGCCAGACUUCUUCGGCUUGCGGAUUAUCUAAGAUCUGCUCUAAGCUGGAAAAGAAUUUCCAUCGCGACGCCGA------
......(((..(((..((.....))(((.(((((((((((((((......)))))))...)))))))).)))..........)))..)))..------ ( -28.20)
>DroEre_CAF1 20302 92 - 1
GAAAUGGGCAACGCAUUCAGCCAGACUUCUUCGACUUGCGGAUUAUCUAAGAUCUGCUCUAAGCUGGAAAAGUAUUUCCAUCGCGACGCCGA------
......(((..(((....(((..((.....)).....(((((((......))))))).....)))(((((....)))))...)))..)))..------ ( -24.20)
>DroYak_CAF1 20853 98 - 1
GAAAUGGGCAACGCAUUCAGCCAGACUUCUUCGGCUUGCGGAUUAUCUAAGAUCUGCUCUAAGCUGGAAAAGAAUUUCCAUCGCGACGCCGACGACGA
......(((..(((..((.....))(((.(((((((((((((((......)))))))...)))))))).)))..........)))..)))........ ( -28.20)
>consensus
GAAAUGGGCAACGCAUUCAGCCAGACUUCUUCGGCUUGCGGAUUAUCUAAGAUCUGCUCUAAGCUGGAAAAGAAUUUCCAUCGCGACGCCGA______
......(((..(((..((.....))(((.(((((((((((((((......)))))))...)))))))).)))..........)))..)))........ (-25.56 = -25.96 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:33 2006