Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,431,888 – 7,431,995 |
Length | 107 |
Max. P | 0.912831 |
Location | 7,431,888 – 7,431,995 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 94.78 |
Mean single sequence MFE | -48.20 |
Consensus MFE | -45.55 |
Energy contribution | -45.55 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.03 |
Mean z-score | -1.86 |
Structure conservation index | 0.95 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.912831 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7431888 107 + 27905053 ---GCUGCUUCUUGCCGUUUUGCUAUUUUACCAUCGGUGGGUCGUGGGACUAGCUACCCACUGAGCGGUGCACGGGUUGCCAGAGGUGGUGCGGGCAUUCGGCGGAGUGG ---.(..((((..((((...((((....((((.(((((((((.((.......)).)))))))))..))))..((.(..(((...)))..).))))))..))))))))..) ( -44.90) >DroSec_CAF1 14742 107 + 1 ---GCUGCUUCUUGCCGUUUUGCUAUUUUACCAUCGGUGGGUCGUGGGACUUGCGACCCACUGAGCGGUGCACGGGUUGCCAGGGGUGGUGCGGGCCUUUGGCGGAGUGG ---.(..((((...((((...((......(((.(((((((((((..(...)..)))))))))))..)))))))))...(((((((((.......)))))))))))))..) ( -50.10) >DroSim_CAF1 13355 107 + 1 ---GCUGCUUCUUGCCGUUUUGCUAUUUUACCAUCGGUGGGUCGUGGGACUUGCGACCCACUGAGCGGUGCACGGGUUGCCAGGGGUGGUGCGGGCCUUCGGCGGAGUGG ---.(..((((..((((....(((....((((.(((((((((((..(...)..)))))))))))..))))..((.(..(((...)))..).)))))...))))))))..) ( -48.60) >DroEre_CAF1 14685 110 + 1 CUCGCUGCUUCUAGCCGUUUUGCUAUUUUACCAUCGGUGGGUCGUGGGACUUGCGACCCACUGAGCGGUGCACGGGUUGCGAUGGGUGGUGCGGGCCUUUGGCGGAGUGG (((.((((..(((.(((((..(((....((((.(((((((((((..(...)..)))))))))))..))))....)))...))))).))).))))(((...))).)))... ( -49.20) >consensus ___GCUGCUUCUUGCCGUUUUGCUAUUUUACCAUCGGUGGGUCGUGGGACUUGCGACCCACUGAGCGGUGCACGGGUUGCCAGGGGUGGUGCGGGCCUUCGGCGGAGUGG ....(..((((..((((....(((....((((.((((((((((((.......))))))))))))..))))..((.(..((.....))..).)))))...))))))))..) (-45.55 = -45.55 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:30 2006