Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,429,331 – 7,429,435 |
Length | 104 |
Max. P | 0.855244 |
Location | 7,429,331 – 7,429,435 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.20 |
Mean single sequence MFE | -24.82 |
Consensus MFE | -6.30 |
Energy contribution | -7.98 |
Covariance contribution | 1.68 |
Combinations/Pair | 1.12 |
Mean z-score | -1.88 |
Structure conservation index | 0.25 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.855244 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7429331 104 - 27905053 GUUCUCA---------------UGUAAAUCAUUAC-AGCUAGGACAAUCAAUAUAUUCUGUAUUUGUUUAAAAAUCUGUGUAUCAUAAUAACGUAACUUACACGAUGUUACUCAAUGUGU (((((..---------------(((((....))))-)...))))).....(((((((..(((...........(((.(((((................))))))))..)))..))))))) ( -14.91) >DroSec_CAF1 12233 114 - 1 AUUUACACAUUGUGUGAUAUUUUGUAAAGCAUUAC-AGCUAGGACAAU----AAAUUCUGUAUUUGUUUAA-AACCUGUGUAUUAUAAUAACGUAAUUCACUUGAUGUUACUCAAUGUGU ....((((((((.((((((((.....(((((.(((-((..........----.....)))))..)))))..-.....(((.(((((......))))).)))..)))))))).)))))))) ( -26.36) >DroSim_CAF1 11183 115 - 1 AUUUACACAUUGUGUGAUAUUUUGUAAAGCAUUAC-AGCUAGGACAAU----AAAUUCUGUAUUUGUUUAAAAACCUGUGUAUUAUAAUAACGUAAUUCACUUGAUGUUACUCAAUGUGU ....((((((((.((((((((.....(((((.(((-((..........----.....)))))..)))))........(((.(((((......))))).)))..)))))))).)))))))) ( -26.36) >DroEre_CAF1 12171 119 - 1 AAUUACACAUUGACUGCUAUCGUGUAAAGCAUUAU-GGAAAGGCCAAUCAAAAUAUUCUGUACUUGUUUUGUCAUUUGGGCAUUAUCAAAACGUCAACUGUGAAAUGUUACUCAAUGUGU ....(((((((((.((((...((((((((((.(((-((((...............)))))))..))))))).)))...))))..........((.(((........)))))))))))))) ( -25.06) >DroYak_CAF1 12644 120 - 1 AAUGACACAUUGUCGGCUAUCAUGAAUAGCCUUAUAGGCUAGGCCAAUCAAAAUAUUCUGUAUUUGUUUUGAAAUCUGGGUAUUAUCAUAAUGUUAGUUGUGAAAUGUUACUCAAUGUGU ....(((((((...((((........(((((.....)))))))))..((((((((.........)))))))).....(((((...(((((((....))))))).....)))))))))))) ( -31.40) >consensus AUUUACACAUUGUCUGAUAUCUUGUAAAGCAUUAC_AGCUAGGACAAUCAA_AUAUUCUGUAUUUGUUUAAAAAUCUGUGUAUUAUAAUAACGUAAUUUACGAGAUGUUACUCAAUGUGU ....((((((((................((((.........((((((................))))))........)))).......((((((..........))))))..)))))))) ( -6.30 = -7.98 + 1.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:27 2006