Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,428,280 – 7,428,386 |
Length | 106 |
Max. P | 0.500000 |
Location | 7,428,280 – 7,428,386 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 85.86 |
Mean single sequence MFE | -20.75 |
Consensus MFE | -13.62 |
Energy contribution | -13.62 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.20 |
Mean z-score | -1.79 |
Structure conservation index | 0.66 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7428280 106 + 27905053 UUGAAGCUAAAAUUGAAUUUUCAUAAUAACUGCAUAACCAA-UGUUUUUAGUACACCAUAGGCGGCUAUUAUGGAUUUUAGUAUGCCAUAAA-AAAUCAUAAGCUUCA .(((((((.....(((...(((((((((.((((........-(((.......)))......)))).)))))))))(((((........))))-)..)))..))))))) ( -21.34) >DroSec_CAF1 11213 106 + 1 UUGAAGCUAAAAUUGAAUUUUCAUAAUAACUCCAUAACCUA-UGCUUUUAGUACACCAUAGGCGGCUAUUAUGGAUUUUAGUAUGCCAUAAA-AAAUCAUAAGCUUUA .(((((((.....(((.((((((((..((.(((((((....-(((((...(....)...)))))....))))))).))...)))).....))-)).)))..))))))) ( -19.20) >DroSim_CAF1 10174 106 + 1 UUGAAGCUAAAAUUGAAUUUUCAUAAUAACUCCAUAACCUA-UGCUUUUAGUAUCCCAUAGGCGGCUAUUAUGGAUUUUAGUAUGCCAUAAA-AAAUCAUAAGCUUUA .(((((((.....(((.((((((((..((.(((((((((((-((............))))))......))))))).))...)))).....))-)).)))..))))))) ( -19.00) >DroEre_CAF1 11130 104 + 1 UUGAAGCCGAAAU-GAAAUUUAAGAAAAAUCCCAUGGACUA-UGCUUUUAGUACACCAUAGGCGGCUAUUAUUAAUUUUAGUAUGCCAUCAA-AAAUCAUUGGCU-AA ....((((((..(-((..............((.((((((((-......))))...)))).)).((((((((.......))))).))).....-...)))))))))-.. ( -22.30) >DroYak_CAF1 11582 108 + 1 UUAGAGCUGAAAUUGAAUUUUGAGAAAAACUUCAUGGCCUAAUACUUUCAGUACACCAUAGGCGGCUAUUAUUAAGUUUAGUAUGCCAUAAAAAAAUCAUAAGCUCCA ...(((((.....(((.((((...............(((((.(((.....))).....)))))((((((((.......))))).)))....)))).)))..))))).. ( -21.90) >consensus UUGAAGCUAAAAUUGAAUUUUCAUAAUAACUCCAUAACCUA_UGCUUUUAGUACACCAUAGGCGGCUAUUAUGGAUUUUAGUAUGCCAUAAA_AAAUCAUAAGCUUCA .(((((((...................................((((...(....)...))))((((((((.......))))).)))..............))))))) (-13.62 = -13.62 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:26 2006