Locus 2772

Sequence ID 3R_DroMel_CAF1
Location 7,423,160 – 7,423,255
Length 95
Max. P 0.585607
window4496

overview

Window 6

Location 7,423,160 – 7,423,255
Length 95
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 85.00
Mean single sequence MFE -19.72
Consensus MFE -14.80
Energy contribution -14.80
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.08
Structure conservation index 0.75
SVM decision value 0.10
SVM RNA-class probability 0.585607
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7423160 95 - 27905053
-ACCCAAACUAAAUCAGAGCGACAACUAUCACUUUGAGCCAAGUAUUUUCU-------AUAUGCA----CAACCCGAACAACUUUUACCCGAA--AAGGUUGUUU-UCAA
-............((((((.((......)).)))))).....((((.....-------..)))).----......(((((((((((......)--))))))))))-.... ( -17.10)
>DroPse_CAF1 32907 110 - 1
AACUUAAACUAAAUCAGAGCGACAACUAUCACUUUGAGUCGAGUAUUUUUCAGCGGGAAUAUGCAUCGAGACCCCGAACAACUUUUACCCGAAAAAAGGUUGUUUUUCGA
.............((((((.((......)).)))))).((((((((.((((....)))).)))).))))......(((((((((((........)))))))))))..... ( -24.10)
>DroSec_CAF1 6107 95 - 1
-ACGCAAACUAAAUCAGAGCGACAACUAUCACUUUGAGCCAAGUAUUUUCU-------AUAUGCA----CAACCCGAACAACUUUUACCCGAA--AAGGUUGUUU-UCAA
-..(((.......((((((.((......)).))))))....((......))-------...))).----......(((((((((((......)--))))))))))-.... ( -17.90)
>DroSim_CAF1 5078 95 - 1
-ACGCAAACUAAAUCAGAGCGACAACUAUCACUUUGAGCCAAGUAUUUUCU-------AUAUGCA----CAACCCGAACAACUUUUACCCGAA--AAGGUUGUUU-UCAA
-..(((.......((((((.((......)).))))))....((......))-------...))).----......(((((((((((......)--))))))))))-.... ( -17.90)
>DroAna_CAF1 5968 89 - 1
-AAACGAACUAAAUCAGAGCGACAACUAUCACUUUGAGCCAAGUAUUUUCU-------AUAU----------CCCGAACAACUUUUACCCGAA--AAGGUUGUUU-UCAA
-....(((((...((((((.((......)).))))))....))).......-------....----------...(((((((((((......)--))))))))))-)).. ( -17.20)
>DroPer_CAF1 33382 110 - 1
AACUAAAACUAAAUCAGAGCGACAACUAUCACUUUGAGUCGAGUAUUUUUCAGCGGGAAUAUGCAUCGAGACCCCGAACAACUUUUACCCGAAAAAAGGUUGUUUUUCGA
.............((((((.((......)).)))))).((((((((.((((....)))).)))).))))......(((((((((((........)))))))))))..... ( -24.10)
>consensus
_ACGCAAACUAAAUCAGAGCGACAACUAUCACUUUGAGCCAAGUAUUUUCU_______AUAUGCA____CAACCCGAACAACUUUUACCCGAA__AAGGUUGUUU_UCAA
.......(((...((((((.((......)).))))))....)))...............................((((((((((..........))))))))))..... (-14.80 = -14.80 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:25 2006