Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,420,674 – 7,420,769 |
Length | 95 |
Max. P | 0.809555 |
Location | 7,420,674 – 7,420,769 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 83.57 |
Mean single sequence MFE | -32.70 |
Consensus MFE | -24.84 |
Energy contribution | -25.40 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -1.84 |
Structure conservation index | 0.76 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.809555 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7420674 95 + 27905053 GCUCUCUUGGCCAUUUGCGAUU-----------------------GCUAGUUUACCACUGCGAGACGCCUUCCUCGGGGCGUCAAUCAAAUCAGCGGCCUUUCAGUGGGCUAAAAUAU ((((.((.((((........((-----------------------((.(((.....)))))))(((((((......)))))))............))))....)).))))........ ( -31.40) >DroSim_CAF1 2622 95 + 1 GCUCUCUUGGCCAUUUGCGAUU-----------------------GCUAGUUUACCACUGCGAGACGCCUUCCUCGGGGCGUCAAUCAAAUCAGCGGCCUUUCAAUGGGCUAAAAGAU ((((....((((........((-----------------------((.(((.....)))))))(((((((......)))))))............)))).......))))........ ( -29.60) >DroEre_CAF1 3746 88 + 1 GCUCUCUUGGCCAUU------------------------------GCUAGUUUACCACUGCGAGACGCCUUCCUCAGGGCGUCAAUCAAAUCAGCGGGCUUUCAGUGGGCUAAAAGAU ..(((.(((((((((------------------------------(..(((...((.(((.(((((((((......)))))))..))....))).)))))..)))).)))))).))). ( -30.60) >DroYak_CAF1 3842 118 + 1 GCUCUCUUGGCCAUUUGCUAUUGCCAUGGCUAUUGCUAUUGCUAGGCUAGUUUACCACUGCGAGACGCCUUCCUCGGGGCGUCAAUCAAAUCAGCGGGCUUUCAGUGGGCUAAAAGAU ..(((.((((((....(((...((.(((((....))))).))..)))........(((((...(((((((......))))))).........((....))..))))))))))).))). ( -39.20) >consensus GCUCUCUUGGCCAUUUGCGAUU_______________________GCUAGUUUACCACUGCGAGACGCCUUCCUCGGGGCGUCAAUCAAAUCAGCGGCCUUUCAGUGGGCUAAAAGAU ((((.((.((((.................................((.(((.....)))))..((((((((....))))))))............))))....)).))))........ (-24.84 = -25.40 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:23 2006