Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,076,256 – 1,076,355 |
Length | 99 |
Max. P | 0.944842 |
Location | 1,076,256 – 1,076,355 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 87.02 |
Mean single sequence MFE | -28.08 |
Consensus MFE | -23.25 |
Energy contribution | -23.31 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.16 |
Mean z-score | -2.20 |
Structure conservation index | 0.83 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.944842 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1076256 99 + 27905053 AUAGGAGGUGGUGCUUGAUGGAGAGAUGAAUCCCAUUUCUUUUCGUUAGCUUCAUAACUACCUAUUGAGUUACUUGCUAGCAAUCAUUCGAUUU-----GCAAG .(((.(((((..(((..(((((((((((.....)))))))....((((......))))...))))..)))))))).)))((((((....)).))-----))... ( -26.60) >DroSec_CAF1 12405 104 + 1 AUUGGGGCUGUCGCUUGUUAGAGGGAUGAAUCCUAUUUCCUUUCGUUAGCCUCAUAACUCUCUAUUGAGUUACUUGCUAGAAAUCAUUCGAUUUGAAAUGCAAG ..((((((((.((...(..((.((((....)))).))..)...)).))))))))((((((......))))))(((((...(((((....))))).....))))) ( -29.90) >DroSim_CAF1 12541 104 + 1 AUUGGGGCUGUCGCUUGUUAGAGGGAUGAAUCCUAUUUCCUUUCGUUAGCCUCAUAACUCUCUAUUGAGUUACUUGCUAGCAAUCAUUCGAUUUGAAAUGCAAG ..((((((((.((...(..((.((((....)))).))..)...)).))))))))((((((......))))))(((((...(((((....)).)))....))))) ( -29.70) >DroEre_CAF1 12712 104 + 1 AUUGGGGUUAGUGCUUGAUAGAGGGAUGAAUCCUGUUUCCUUUCUUUAGCCUCAUAACUCUCUAUUGAGUUACUUGCUACCAAUCGUUCGAUUUUAUAUGCAAG ((((((((.((((((..((((((((((((...(((...........)))..))))..))))))))..)).)))).))).))))).................... ( -26.10) >consensus AUUGGGGCUGGCGCUUGAUAGAGGGAUGAAUCCUAUUUCCUUUCGUUAGCCUCAUAACUCUCUAUUGAGUUACUUGCUAGCAAUCAUUCGAUUUGAAAUGCAAG ...((((((((((.......((((((...........)))))))))))))))).((((((......))))))(((((....((((....))))......))))) (-23.25 = -23.31 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:19 2006