Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,420,018 – 7,420,119 |
Length | 101 |
Max. P | 0.990065 |
Location | 7,420,018 – 7,420,119 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 93.17 |
Mean single sequence MFE | -33.80 |
Consensus MFE | -28.02 |
Energy contribution | -28.30 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.04 |
Mean z-score | -2.29 |
Structure conservation index | 0.83 |
SVM decision value | 2.19 |
SVM RNA-class probability | 0.990065 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7420018 101 - 27905053 UUUAGUCCUGCUGCGUUGCCUGGGCCAAUUUUAAUAAACAACGAUUGCCCGCAGAGUUGUGGCACCAUUUGUGCCUUACACCACCGUCCGGCACUGUAGCU .........((((((.((((.((((............(((((..(((....))).)))))(((((.....)))))..........)))))))).)))))). ( -34.10) >DroSec_CAF1 3041 101 - 1 UUUAGUCCUGCUGCGUUGCCUGGGCCAAUUUUAAUAAACAACGAUUACCCGCAGUGUUGUGGCACCAUUUGGGCCUUACACCACCGUCCGGCACUGUAGCU .........((((((.((((.((((................((......))..((((...(((.((....)))))..))))....)))))))).)))))). ( -32.10) >DroSim_CAF1 1930 101 - 1 UUUAUUCCUGCUGCGUUGCCUGGGCCAAUUUUAAUAAACAACGAUUACCUGCAGAGUUGUGGCACCAUUUGGGCCUUACACCACCGUCCGGCACUGUAGCU .........((((((.((((.((((............(((((.............)))))(((.((....)))))..........)))))))).)))))). ( -31.32) >DroEre_CAF1 3121 101 - 1 CUUGGUCCUGCUGCGUUGCCUGGGCCAAUUUUAAUAAACAACGAUUACCCGCAGAGCUGUGGCACCACUUGGGCCUUACAGCUCCGUCCGGCACUGUAGCC .........((((((.((((.((((................((......))..((((((((((.((....)))))..))))))).)))))))).)))))). ( -37.80) >DroYak_CAF1 3245 101 - 1 CUCAGUCCUGCUGCGUUGCCUGGGCCAAUUUUAAUAAACAACGAUUACCCGCAGCGUUGUGGCAUCGUUUGGGCCUUACAGCUCCGUCCGGCACUGUAGCU .........((((((.((((.((((..............((((((...((((......)))).)))))).((((......)).)))))))))).)))))). ( -33.70) >consensus UUUAGUCCUGCUGCGUUGCCUGGGCCAAUUUUAAUAAACAACGAUUACCCGCAGAGUUGUGGCACCAUUUGGGCCUUACACCACCGUCCGGCACUGUAGCU .........((((((.((((.((((............(((((.............)))))(((.((....)))))..........)))))))).)))))). (-28.02 = -28.30 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:22 2006